BtaEX0041303 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr18:47715442-47725316:-
Coord C1 exon
chr18:47725266-47725316
Coord A exon
chr18:47716868-47716954
Coord C2 exon
chr18:47715442-47715568
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTCCCTCCCCAGCAC
3' ss Score
9.97
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CACCCAGAGGAAGGAAGAATGACTGTTGTACAGTCAGAAGCAAGCTTCAAG
Seq A exon
CACTACCTTTTCCAGACTGTGCTTCTCTAAAATAGGAATCTAGAAGATGATCAATCATGTCTCACAGCTCTAAAAACCATGGCTCAG
Seq C2 exon
AGATCAGTGATGTTCAGGGATGTTGCCATTGACTTCTCTCAGGAAGAGTGGGATTGCCTGGACTCAGCTCAAAGAGATTTGTATAGAGATGTGATGTTGGAGAACTATAGTAACTTAGTGTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038050-'1-3,'1-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAGAGGAAGGAAGAATGAC
R:
ATAGTTCTCCAACATCACATCTCT
Band lengths:
159-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development