BtaEX0041307 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
Coordinates
chr18:47716868-47727252:-
Coord C1 exon
chr18:47726938-47727252
Coord A exon
chr18:47725266-47725316
Coord C2 exon
chr18:47716868-47716954
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCCTCTGAGAGTAGCAC
3' ss Score
-0.24
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGCGCGGCATTTGGAGCTAACTGGTTCTAGCAGCAGTGGGGTCCACGAAGCCCGCCGGGAGTTGGTGAACTAGGTCTCCTAGCGTCCTGGCCGTCAGCCACAGCCTGCCCGGAGTTGGACTACATTTCCCAGAGCCACCGCGTCCCGAAGCGGCTTCATTTCCTTTTTTTTTTCGCGTGATTTGGGGACGTCGCATGGGGAGAGGGCTGCGTCCCTGGAGGAGTTTGGCCTGGCTCCCGCAGGGCGGGCGAACCCGAAACCGGGCAGGGACTCCGGGCACCAGATCCTGGGCCCTGAACTGCACCCTCTATCGAG
Seq A exon
CACCCAGAGGAAGGAAGAATGACTGTTGTACAGTCAGAAGCAAGCTTCAAG
Seq C2 exon
CACTACCTTTTCCAGACTGTGCTTCTCTAAAATAGGAATCTAGAAGATGATCAATCATGTCTCACAGCTCTAAAAACCATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038050_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGAGGAGTTTGGCC
R:
AGAGAAGCACAGTCTGGAAAAGG
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development