RnoEX0000998 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr1:87751128-87763987:+
Coord C1 exon
chr1:87751128-87751210
Coord A exon
chr1:87752666-87752720
Coord C2 exon
chr1:87761021-87763987
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTTAACTTTCTTATTTTCAGGCT
3' ss Score
9.92
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTAGGCACCCAGTGGAGCAGGTTGACTGAAGTCAGGTGTTGGAGCCCCGCGGTGGAGGCGGGACCCTGAACTTCGCTGCGGAG
Seq A exon
GCTATAACATAGAAGAGAAAAAATGGCCGTTGTCCATTTAGAAGGGAAGTTTGAG
Seq C2 exon
GCTTCCTTCTGAACAAGGACTTAGCTTCAAAATAGCACACCAAGGGATCTGCGTTGTCTCAGTGGGAAATGAGGGAGAGGTTAAAAAACTGGGCGCCTAAGACTAATTCTAGAAAACCTTTGGAAGTCAGAGTTAGAGAAGGAATAAGACAATTAGAAAGACTATTACAGGCAAGAGATGATAACACATGACAAAATGTCCATTTTCAGCCCAGGGACGCACCTACCTCAGCATCCACAGGGTTACTCTACAGAGAAGCCCTATAAATGTGAGGAGTGCGGGAAAGCCTTCAGGCGAGCCTCACACCTGTCCCAGCATCACAGTATTCACACTGGTGAGAAACCCTATGAATGCAAGCAGTGTGGGAAGGCCTTTAGTCGTGATTCCCAGCTAAGTCTTCATCAGAGACTTCACACCGGTGAGAAACCCTACACGTGCAAGGAATGTGGAAAGGCTTTCACTCAGAGCTCACAACTTATTTTGCACCATAGAATTCATAC
VastDB Features
Vast-tools module Information
Secondary ID
Rn.55566_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGTCAGGTGTTGGAGCC
R:
ACCTCTCCCTCATTTCCCACT
Band lengths:
139-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]