HsaEX0073625 @ hg19
Exon Skipping
Gene
ENSG00000197050 | ZNF420
Description
zinc finger protein 420 [Source:HGNC Symbol;Acc:20649]
Coordinates
chr19:37569320-37580029:+
Coord C1 exon
chr19:37569320-37569472
Coord A exon
chr19:37571247-37571290
Coord C2 exon
chr19:37579941-37580029
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTCTGAGAGTAGAGC
3' ss Score
-0.38
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTCCGTTAGTTTGCGAGATTTGGAGGCCTCGCGTGGGGAGAGGGCCGCGTCTGTGGAGGAGCTTGGCTCCGCACCTGCTGGGCTGGCGAACCCGAAATTGGGCTTGGAACCCGGGAGCCAGATCTTGGACCCTGAACTGCACCTCTGTCAAG
Seq A exon
AGCCCAGAGGAGAAAGAATGGCTGTTTCAGTAGCAATGTCCAAG
Seq C2 exon
CTCTGCATTCTCCAGACTCTGTGCTTTCCTAAGATAGGAACCCAGAAGAGGACTGATCATTTCTTGCAGCTCTAAAAACCATGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197050-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTGGGCTTGGAACCCGG
R:
CCGAGCCATGGTTTTTAGAGCT
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)