BtaEX0041393 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009521 | ZNF565
Description
Bos taurus zinc finger protein 565 (ZNF565), mRNA. [Source:RefSeq mRNA;Acc:NM_001102216]
Coordinates
chr18:47018467-47026692:-
Coord C1 exon
chr18:47026566-47026692
Coord A exon
chr18:47025604-47025699
Coord C2 exon
chr18:47018467-47019902
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTCCTATAAACAGGAC
3' ss Score
10.24
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATTGGTGACATTTAGGGATGTGGCTATAGAGTTCTCTCAGGAAGAATGGAAGTACCTGGAACCTGCCCAGAGGGACCTGTACAGGGAGGTGACTTTGGAAAACTTTGGCAACTTGGTCTCACTAG
Seq A exon
GACTTTCCATTTCTAAGCCCGATGTTGTCTCCTTACTGGAGCAAGGGAAGGAACCCTGGATGGTTGTGAATGATATGACAGGACCATGGTGCCCAG
Seq C2 exon
ACCTGGAGTCAAGATGTAAGACATTTCTGCAGAAAGATACCTTTGAAGTCATGTCATTCAATTGGGAGCTAATGGAAAGCCTTCAGTGCTATGGTGAAGACTGGGCATACAAAGGCCAGTTTGAAAAACAACAAGTAAATCATGAGTGCTGTTTTAAGCAAGTGAAGATCACCTATGGAAACATGCCCACTTTTGAGTGTGGGCATACATCACTCACCCTACATCCCAGCAGTGAGACTGGTGAGAAATCGATTGAATGTAATGAATGTGGGAAAGCATTCAGCCGTGGCTCACACCTTATTCAACATCAGAAAACTCACACTGGTGAAAAGCCCTTTGAATGTAAGGAATGTGGGAAGGCCTTCAGTCGTACCTCACACCTTGTTCAACATCAGAGAATTCATACAGGTGAGAAACCTTATGACTGCAAGGAGTGTGGGAAGGCCTTCGGTCGAACTTCAGAACTCATTCTCCATCAGAGACTTCATACAGGTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009521-'7-11,'7-7,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0403211=Rpr2=WD(100=13.6),PF134651=zf-H2C2_2=WD(100=6.0),PF097235=Zn-ribbon_8=WD(100=10.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACCTGGAACCTGCCCA
R:
GCCCAGTCTTCACCATAGCAC
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development