MmuEX0021093 @ mm9
Exon Skipping
Gene
ENSMUSG00000066647 | Gm5113
Description
predicted gene 5113 [Source:MGI Symbol;Acc:MGI:3644651]
Coordinates
chr7:30954894-30965228:+
Coord C1 exon
chr7:30954894-30955233
Coord A exon
chr7:30960870-30960965
Coord C2 exon
chr7:30962663-30965228
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTCTCCCATTAACAGGAC
3' ss Score
11.02
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGGCACTGCGGGTTGCTTATCCGTCTCCCACGCACAAACCTGGCCGCCTCTTGTGATTTGGGGTTTCTTAGAGTAGATTGTTGTCACTTGGACCCAAATAAGCTCACGCCTGGTAAGATGTTTGGAGTGGGGACTTCCTCTTTGGTACTTCACGGGCGGCGTCTCAATAATACACTGAGCCCAGACCCCAAGGTGAAAGGACACCATCTTTGTCCGGGGCTGATGTGGCTATGGACTACGTTTCCCAGAGTCCATAGCGAGCTGACATTGTAGCTCAACTTTGATGAAACCTTTACCTTTGGCTGAAGCAGGATGCGCGCGCCTTCTACTGAGACCCAAG
Seq A exon
GACTTGTCATTTTTAAGCCTGATGTCGTCTTCTTATTGGAGCAAGGGAAAGAGCCATGGACGGTTACAAATTATATGACAAATCCTTGGCACCCAG
Seq C2 exon
ACTTGAAGACAAAGTGTGAGAGAGTTCCCAGGAAAGGGCTCTTTGAATAGAGTCATTCAAATGGGAGGTAACGGGAAGCTAGCAGCACCGTGACTTTCAGGACCCTCACCTCACAGATGCCTGGGCGTGCAGAGACCGCTGTGAGAGACAGCGCACAAGTCAGGAGTGTCATTTCAAGCAAGTGGAAACCCCTGGAAAAGTGTCCCTGCTCTCCAGCGTCACACACGGCATGGGAGCGGCAGGACTGCAGTAGAGAAAGTGACCTGACCGGATGCAGTGAGCTCGAGGAAGCAGGGAAGCGTTTAGCTGTGGCTTGAGCCTTACTCAGCACCTCAGCAGTTGAAAAGCCCTTTGAGTGTAAGGGGTATGGGAGAGCTTTTGCTCAGGCCTCACACCTTGTCCAGCATCAGAGAATCCATTCAGATGAGAAGCTCTATGGGTGCTGGGCGTGTGGCCATCCTTCAGACCTCAGTCTCCATCAGAGACTTCCTGCTAGCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066647_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCCATAGCGAGCTGACA
R:
CTAGCTTCCCGTTACCTCCCA
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: