BtaEX0041460 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016496 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr5:32098741-32102396:+
Coord C1 exon
chr5:32098741-32098841
Coord A exon
chr5:32101476-32101684
Coord C2 exon
chr5:32102305-32102396
Length
209 bp
Sequences
Splice sites
3' ss Seq
CTGATATGAATTTGTTCCAGGTC
3' ss Score
8.64
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CGCTGGCTCCGCGGACGCCGGCTCCGACGAAGCGAGGGCGGAGGGGAGGGGCAGCCGGCGCCCGGGAGGGAGACACCGGGCTGCAGGCCAAGCCGACCCGG
Seq A exon
GTCACAATTTGGGTTTGCAGCAAAAATGCTTTCAGAACAGACAGCAGCCCTGGGGACAGGATGGGAGTCAATGAATGTCCAGGTGGATAGAGCAGAGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGGGGCCATGGAGAACAGCTCCAGGGCCATTGGAGCACCTATGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGG
Seq C2 exon
CTCAGTCCACTCCCTGGGTTCCTGCCATTCCCCAAGAAGGGAGCACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCGGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016496-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.775 C2=0.677
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCGACGAAGCGAGG
R:
GTGATCCCGCCGCAAGAAG
Band lengths:
172-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development