MmuEX6056229 @ mm10
Exon Skipping
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98292886-98296130:-
Coord C1 exon
chr15:98296055-98296130
Coord A exon
chr15:98293620-98293828
Coord C2 exon
chr15:98292886-98292977
Length
209 bp
Sequences
Splice sites
3' ss Seq
CACTTCCTGACTTGTTCCAGGTC
3' ss Score
8.37
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTCGCTTGTCGCTTGCTGTGCGGGCCGCGGGCTCGGCCGCGCCGGGCGGGAGGTAACGCCAAGGGGCCGAGCCGGG
Seq A exon
GTCACAGTGTGTGCTTGCTGCAGACATGCTTTCGGAACAGGCTGTAGGCCTGGGCACGGGATGGGAGCCAATGAATACACAGCTGGATGCGGCAGAACTCCAGTCAGAAAGAGGGACCCGGGAAGAGGGCTCGTGGAGAACAGCACCAAGGCCGCTGGAGCACCTTCACTGTGGTCTTGAAGACGAGCCACTGTCCCTTCAGGAGAAGG
Seq C2 exon
CAACTTCTGTTCCCTGGGTTCCGGCCGTTCCCCAGGAGGGGAACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCCGGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987-'0-5,'0-3,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.906 C2=0.884
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=PU(3.1=3.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTGTCGCTTGCTGTG
R:
GGATCCGGCTGCAAGAAGTG
Band lengths:
164-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types