HsaEX7007120 @ hg38
Exon Skipping
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr12:48347252-48350771:-
Coord C1 exon
chr12:48350046-48350771
Coord A exon
chr12:48347907-48348115
Coord C2 exon
chr12:48347252-48347343
Length
209 bp
Sequences
Splice sites
3' ss Seq
CTGATATGAATTTGTTCCAGGTC
3' ss Score
8.64
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GGTTACCCCGTGGCTCCCTTTCTCTTCACTTGCTCATGCCCCAGCTCATGGGAAACCTGTTTTCTGACCTCACTTCCCCTGCTCCAGTTCTGCCTTGCTCGGATTCTCTGAAATCTGACCCTTTCCAGGGGCACTGTGACAAGAAGAAGGGAAGAAGCAACCTTACCCCTGAGCAGGCTCCCGTCCCGCCCATGCCCTACCCGTGGCAGGGGCCAGGGTTCTCTGATGGACGGAGCCAACTCGTCCGTGTGCCCTTGGGCTACTCATTTTTATAACATGGCCCCTTTTCTGTTCATCAGCACTGGCTGCAGAAACTTCCTTTTGCAGGTCCCTTGCTACCCATATGTGTGAAGAAAAGGGGGAAATGAAAGCCCTAGAACCCACACTGCAGTGGGCATGGGATCATCCTGGAACCAGGAGAAACGAGGTTAGGGCTACCACCTTAACCGCCCAGGTGCTGGCTCTGCGTGAATATCTTAGGAAATGCAAGCTGAGGACAG
Seq A exon
GTCACAATTTGGGTCTGCAGCAGAAATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAGAGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCTGTGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGG
Seq C2 exon
CTCAGTCTGCTCCCTGGGTTCCTGCAATTCCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528-'3-7,'3-6,5-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.906 C2=0.670
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCTGCAGAAACTTCCT
R:
CTGTGATCCAGCCGCAAGAAG
Band lengths:
293-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains