RnoEX6033879 @ rn6
Exon Skipping
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139904487-139907640:-
Coord C1 exon
chr7:139907594-139907640
Coord A exon
chr7:139905236-139905444
Coord C2 exon
chr7:139904487-139904578
Length
209 bp
Sequences
Splice sites
3' ss Seq
CCGTTGTTGACTTGTTCCAGGTC
3' ss Score
8.18
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GGCTCGGCCGCGCCGGGCGGGAGGCAGTGCCAAGGGGCCGAGCCCGG
Seq A exon
GTCCTAGCGGGCACTCACTGCAGACATGCTTTCGGAACAGAGCGTAGCCCCGGGTGCAGGATGGGAGCCAATGAGTGCACAGCTGGATGCAGCGGAACCCGGGTCAGAAAGAGGAGCCCGGGAAGAGGGCCCGTGGAGAACAGCACCAAGGCCGCTGGAGCACCTTCACAGTGGTCTTGAAGACGAGACACTGTCCCTTCAGGAGAAGG
Seq C2 exon
CACCGTCTGCTCCCTGGGTTCCTGCCGTCCCCCAGGAGGGGGACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCTGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447-'0-5,'0-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.806
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]