BtaEX0041555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025023 | ZNF8
Description
Bos taurus zinc finger protein 8 (ZNF8), mRNA. [Source:RefSeq mRNA;Acc:NM_001098470]
Coordinates
chr18:65793168-65799505:+
Coord C1 exon
chr18:65793168-65793263
Coord A exon
chr18:65793503-65793571
Coord C2 exon
chr18:65797507-65799505
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTGGGGGCTGGTCTTGCAGGCA
3' ss Score
5.33
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGCCTGAGCTTCCCAAACCAGACGTCATCTCCCAGCTGGAGCAAGGGGCTGAGCTGTGGGTGGCGGAGAGAGGACTTGCCCAGGGCTGCCGTCCAG
Seq A exon
GCATCCTCCACCTGGCACAGACCAAGACCCAAGCTCCCAGGAGAAAGCAGGTGTTTGCCCTAAGCCACA
Seq C2 exon
GCCAGGAAGCTGCACTGGAGGGTCAACCACCAGCCCGGGAGCAGGGCCTTCCTGAGGAGAAGGGGCAGGAAGGCTTCCTGGGGGAGGCGCTGTGTCCCACTTCGTCGGGGGAAGACTGGGAACGGGCGGGCTGGGTCAGGGGGCCCGAGCAGGACCAGGGGCATTGGCAGCTCAAGGAAGTCCCGGTTCAGGACGGAAGTCTCAGACTTGGGGAGAGCCTCGGTCGGCTCCCAGAGGTCTCCCGGGTGGAGCGTGCGTGTGTGCCGGAATCTCGGGGTCCGAGCTCGGAGCGGAGCCCTGACGCCGCACGTGAGGAGACGGGCTCCCCGGGACCGCAGCCGCGCAGCCGCCACGACCGCGGCGAGGCTTCCACTGTGGCGCGTCCCGTTCCGGAGGCGGAGCTGGCGCGCGGCCAGGCGCCCGACAAGCCCTACAAGTGCGCGGACTGCGGGAAGTCCTTCAACCACAACGCGCACCTCACGGTGCACCGGCGCATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025023_MULTIEX1-3/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.083 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000004508fB8070
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCTTCCCAAACCAGAC
R:
CCTTCCTGCCCCTTCTCCTC
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development