BtaEX0041556 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025023 | ZNF8
Description
Bos taurus zinc finger protein 8 (ZNF8), mRNA. [Source:RefSeq mRNA;Acc:NM_001098470]
Coordinates
chr18:65793168-65799505:+
Coord C1 exon
chr18:65793168-65793263
Coord A exon
chr18:65793904-65794048
Coord C2 exon
chr18:65797507-65799505
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTCAGCAC
3' ss Score
11.29
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCCTGAGCTTCCCAAACCAGACGTCATCTCCCAGCTGGAGCAAGGGGCTGAGCTGTGGGTGGCGGAGAGAGGACTTGCCCAGGGCTGCCGTCCAG
Seq A exon
CACTTCCTCTTTTCCCAGCAGCGTGTGGTGTGTCTGTCCCATGGGATAATTTCTGAGTGTGAACCTGCCCTTCACCTCCATTTCATTCTTGCACGTCCGCAGTCTGTGCACTTGTGCCGTACGCGCTTCTGTTCTCGTGGGAGCC
Seq C2 exon
GCCAGGAAGCTGCACTGGAGGGTCAACCACCAGCCCGGGAGCAGGGCCTTCCTGAGGAGAAGGGGCAGGAAGGCTTCCTGGGGGAGGCGCTGTGTCCCACTTCGTCGGGGGAAGACTGGGAACGGGCGGGCTGGGTCAGGGGGCCCGAGCAGGACCAGGGGCATTGGCAGCTCAAGGAAGTCCCGGTTCAGGACGGAAGTCTCAGACTTGGGGAGAGCCTCGGTCGGCTCCCAGAGGTCTCCCGGGTGGAGCGTGCGTGTGTGCCGGAATCTCGGGGTCCGAGCTCGGAGCGGAGCCCTGACGCCGCACGTGAGGAGACGGGCTCCCCGGGACCGCAGCCGCGCAGCCGCCACGACCGCGGCGAGGCTTCCACTGTGGCGCGTCCCGTTCCGGAGGCGGAGCTGGCGCGCGGCCAGGCGCCCGACAAGCCCTACAAGTGCGCGGACTGCGGGAAGTCCTTCAACCACAACGCGCACCTCACGGTGCACCGGCGCATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025023_MULTIEX1-4/5=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGGACTTGCCCAGGG
R:
GCTCTCCCCAAGTCTGAGACT
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development