BtaINT0166126 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025023 | ZNF8
Description
Bos taurus zinc finger protein 8 (ZNF8), mRNA. [Source:RefSeq mRNA;Acc:NM_001098470]
Coordinates
chr18:65793168-65794000:+
Coord C1 exon
chr18:65793168-65793263
Coord A exon
chr18:65793264-65793903
Coord C2 exon
chr18:65793904-65794000
Length
640 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTTTTTTTTTTTTTTTCAGCAC
3' ss Score
11.29
Exon sequences
Seq C1 exon
GGCCTGAGCTTCCCAAACCAGACGTCATCTCCCAGCTGGAGCAAGGGGCTGAGCTGTGGGTGGCGGAGAGAGGACTTGCCCAGGGCTGCCGTCCAG
Seq A exon
GTGAGAGCCCACCGAGTGGGAGCCCTGATAGGAGCAGCTGTGCCCCTTGGAAGGGGTGATGTGTTGGGGTCCCCAGAGGAAAGTCAGCAAAGGGAAGAGGCCAGTCAGGGGGGCCAGAGCCCCCCCTGGACCCCCTCAGTCCCCCGGCAGTGCGCTGTGACAGTTCGTGAGAGGTGTTGGCTACTAGGCAGGCTCATGTAGGCTCTGGGCCAGGGGCTGATTGGGGGCTGGTCTTGCAGGCATCCTCCACCTGGCACAGACCAAGACCCAAGCTCCCAGGAGAAAGCAGGTGTTTGCCCTAAGCCACAGTGAGTCTCTCTTCCCAGTTTGGTTCAGGGCAGTGCCCCCAAATCCAAGTTCCCCGACTCCCCGACCAAGCCAGAGGCCGGCCTCAAGGGACAAGCTCAAGGGACAGGCCTCAAGGCCTCAAGCTGTCCTTCTGGGACAGCTGCCTCGGCCGCCCTGGAGCCCTTTCTCCACAGGGGCTTGGGCCCCGTCCTTCACCCCCTGCCTGCAGTGCTCCCAGTGCTCTGGGGTCCCCTCACTCATGCCCCCCTTTCTCTGAGCTCAGAGATACTGGCTCTGCTCGAGCGGCCAGAGTCCAGCACTTCCTCTTTTTTTTTTTTTTTTTTTTTTTCAG
Seq C2 exon
CACTTCCTCTTTTCCCAGCAGCGTGTGGTGTGTCTGTCCCATGGGATAATTTCTGAGTGTGAACCTGCCCTTCACCTCCATTTCATTCTTGCACGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025023:ENSBTAT00000004508:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCTTCCCAAACCAGAC
R:
ACGTGCAAGAATGAAATGGAGGT
Band lengths:
190-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development