HsaINT0188435 @ hg19
Intron Retention
Gene
ENSG00000083842 | ZNF8
Description
zinc finger protein 8 [Source:HGNC Symbol;Acc:13154]
Coordinates
chr19:58797476-58807254:+
Coord C1 exon
chr19:58797476-58797571
Coord A exon
chr19:58797572-58805463
Coord C2 exon
chr19:58805464-58807254
Length
7892 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCTTTGGGTTTTCTTTCAGCCT
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTCCTGAGCTTCCGAAGCCTGAAGTCATCTCCCAGCTGGAGCAAGGGACCGAGCTATGGGTGGCTGAGAGAGGAACCACCCAGGGCTGCCATCCAG
Seq A exon
GTGAGAACCCACTATGTGGGAGCAGCTAATGGGAGCAGCCTAGCAGGTCACTGGAGATGCACTTCATGGAAAGGGTGGTGGTTGGTGGTCCTGAAGACCACCCCATTCACTAGGAGTATACAGGACTCAGCATAGAGTCATGCTGACAGCTCTCAGTATAATGAGACCAACAAAGGGGAAAGGCGCGTGGGGATAAGTTCAGAGGAAGCCAGGCATGAGCCTCCAGAGTCCCCTCACTGTGGAGTCATTCAGGATGTGCCAGGCTCCCCCAGCACTCAGGTGTGACACCTCATGAGACATGAGCTCTACCAGGGAATCTTGTTAAGAGACTCAGTGCTAGGAGTTTTGACTGAGGCTGCCACATAGACACTCTCTGCCTAGCACAGACCAAGGTTCCAGACTACCAGGAGAAAGCCAGTGTTTGGAATAAACCACATAGTGTGTGCAGTGTGGGTGTAGTAAACCACTCTCATCAGTTAGGGTTGTGGGAACCATCCCCAAATCCAAATTCTCAGTTGCAGCCAAAGGCTAACCTTGTGAATAGGCTTCTCCTAAGAATGCTGGTTTCAGGCCTGCCCTGTTAAATCTTTTCTGCACAGTGCTCCATAGCCTTCTCACCTGTGCTCCCCATCTTCTAAGCTCAGAGGTCATCACCTGTGCTCCAGTGCTGAGAATCCCACCCCTTCCTCCCTCTCTGCTTCATCTTCCCTTATAGGTTCCAGGTCATTCCCTCTCTCACCATCCTTCTCAGCATGTCCTTTCTGTGGCATCATTTCTAATATGTGAACCTGCCCTTCATCTTCTCCATTTCATTCTTGCATGTCCAGATTCTTTGTGTTTTGTTTTGTTTTTAAGACAGGGTCTCACTCTATCGCCTAGGCTGGAGTGCAGTGGCGTAATCACGGTTCACTGCAGCCTTGACCTCCCTAGTTCAAATGATCCTCCCACCTCACCCTCCCGAGTAGCTGGGATTACAGACATGCACCACCACGCCCTGGTAATTTTTGTATTTTTAGTAGAGATGGGATTTTGCCATCTTGCCAGGCTGGGCTCGAACTCCTGGGCTCAAGCAATCCACCTACTTTGGCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACCATGCCCAGCTTTTTTTTTTTTTTTTTTGAGACCGTCTCTGTTGCATAAGCTGGAGTGGCAGCAGTGTGATCATGGCTCAGTGCAGCCTCAGCCTTCCTGTCACAAATGATCCTCCTGCTTCAGCCTCTTGAGTAGCTGGGACTACAGGTGTGTACCCCCACACCTGGCTAATTTTCTTTTTAAATTTTTTTGTAGAGACACAGTTGCACTGTGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGCAATCCTCCTGTCTTGGCCTCTCAAAGTGCTGGGATTACAGGTATCAGCCACTGCACCTGGCCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGTCTCACTCCGTTGCACAGGCTGGAGTACAGTTGCATTATCTTAGTCTCCTAGGCTCAAGTGTTCCACCTACCTCAGTCTCCCTAGTAGCTGTTACTACAGGTGTGTACCACCATGTCCAGCTGATTTTTTTGATTTTTTTCTTTTTCTTTTTTAAAAATTATTTTACTTTTTTTCTTTTTTTTTCTTTCTTTCTTCCTTTTTTTTTTTTTTTTAGAGATGGGGTCTCGCCATCTTGTCCAGGCTGCAGGCTGCTCAAACTAACTCCTGGGCTCAAGCAATCCTGCCTCAACCTCCTAAGTGCTGGGATTATAGGCGTAAGCCACTATGCCTGACTTTTTGTTTGTTTGTGTGTCCTTTTTTTTTTTTTTTTAATAGAGATGAGATCTTTCTACACTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAACAGTCCTCCTGCCTCAGCCACTGAAAGTGCTGGGATTACAGGTGTGAGCCACTGTACCTGGTCACATGTCTAGATTCTGTAAACTTGTTCCCCACACCCTTCTTTATTCTCTTATGAGGAAGAATTGTGTTTAGCTATAAATACCCTAAAACCAGGTTGGAGCAGCTCAAAATAAAGAAGCATTTTTCTTGTAAAACAGGAGCCCTGAGTCTGCTGGTACTGTCTTGGCATCTCAGAGGTGCCAGGGCTGATTGTTCTGTGATTTTCCCAGGCTGTCCTTGGGATTACAGTGCAGCTGCAGCAGCTCCAGCCATCACAGTTGTGCTCCATGCAGGAAGGAGGGGAAGAGGTAGGAAGAATTCTGCCAGCCACATCTGTCCCCTTTTGGCAGAACTCTAGATGTCACCTGCTGGGGTCTCTTTAGCCAGAACTAGGTCACCTCCTCTTGCACTGACCCTAGTTGCTAGAGAGGCTGGAAAGCTAGGGGTGTCTAGATTGTCATAATTGGCTTGGGCGAGTCATGGTCCCCTTGCTGTGGCTTGTGTGTTGGTACCCTGACCACATTCTAGAGTAAATAGCATCTGGCCATGGGATGTACAACCAGCAATGCCTGCAGATTAGCCTCCCACCCAAATACTTCTGATGCCACCCAGGGCTTTCTGATTCTGCAGAAAAACACATATGCCCCCATGATAGCGTATGACCTATCAACTGGGAGTCGGGTGAATCTGCTGCAGACCCTGTTTTCCTGCCCCTTTCATCGGTTGTCACTGCTGTTACTTCAGACATGTATGTCGGAAGCAAATTCTCATCACCCTGGACATATGCCTGTCACTCACAAGTCTTATGCCATAACCAAATCCAGGATCTAAAACGTGTGCCCATAAATACTAAGCAAAATGTTGTGCTTGCATGGATTAGGAGTATGGGGTCAAAATCATGATGGACAGTTTCAATAACTTAATACCTAGACAGTTATAAATACTCCAGAAGCAGAAGGTTTTCAAGGCTTTATGTTAAGACAGAAACATATTTTCCATGTAATGCTTTGTATTAGTTTCCTGTTGCTCCTGTAACAAAGTACCACAATCTAGGTGGCTTGAAAAAGCACCGATTTGGCTGGACGCAGTGGCTCACCCCTATCATTCCAGCACTTTGGGAGGCCAGGGCAGACGGATCACTTGAGTCCAGGAGTTCGAGACTAGCCTGGCCAACATGGCACAACACCGTTTCTACTAAAAATACAAAAATTATCCAGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCACAAGAATCTCTTAAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCAAAACTCTGTCTCAAAGAAAAAAAAAAAAAAAAAGGACAGATTTATTTTCTTATAGTTGTGGAGGTCAGAAGTTCAAAATGGTTCATCAGGGCTAGTTCCTCTGACGGCGCCCAGAGAGAATGCATTTCTGTCTTTCTCAGCAGCTGGAGGCTGCCCAGACTCCTTGGTTCATAGACCCTTCCTCCATCTTCAGAGTGCTTCACTCTGACCCATTTCCATTATCACAACCGCTTCCCTGACTCAGACCCTTCTGCTTCCCTCCTATATGGACTCTTTGGTCAGATTTAGGGCCCCAGGATAATCTCCCATTTCAAGATTCTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACAAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAGCCTCCGCCTTCCCAGGTTCAAGCGATCCTCCTGCCTCCACCTCCCAAGTAGCTGAGACTACAGGCCGTGCCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGATTTCACCATGTTGGCCAGGATGGTCTCAATCTCTTGACCTTGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTAAAGGCGTGAGCCACCGCGCCTGGCCCATTTCAAGATTCTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTCTTCCCCAGACTGGACTGCAGTGGCGCAATCTCGGCTCATTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTGCCTTAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACTGCACCCGGCTAATTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGGCCAGGATGGTCTCTATCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACCGCGCCCGGCCATCAAGATTCTTAATCACAGCTACAATATCCCTTTTGCCACATAAGGTTCCAGGGATTGGGATGGGGACATCTTTGAGGGGCCGTTATTCAGCATACCACATGATTAAAATAGAGAGTAAATTTTTTTTTTATTATTTTTAAGGAAAAGAAGCCTAGTCAATAGAAGAAGACCGCGTCTCTACAAAAAAATTTAAAAATTACCTGGCATGGTGGTGTGTTCTTGTAGTCCTAGCTACTTAGGAGGCTGAGCGGGGAGGATTGCTTAAGCCCAGGAGTTCAAGGCTACAGTGAGCTACAATTTGCACCACTGCACTCCAGGCTGAGCAACAGAGCATTAAAAAATAAAGGAAAAGAGGCCAGGCATGGTGGCTTACGCCTGTAATCCCAGAATTTTGGGAGGCCGAGGCGGGTGGTTCGCTTGAGTCCAAGAGTTCAAGACCAGCCTGGGCAACCTGGCAAAACCACATCTCTACAAAAAATGCAAAAAAATTAGCTGGGTGTGGTGGTGCATGCCTGTGGTCTCAGCTGTTCAGGAGGCTGAGCCCAGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTTCAGTCTGGGTGACAGAGTAAGACCTTATTTCAAATATAAAATAAAATAATGGTGAAGAATCCCTGTCCAGGCAGATCCCACTCCCAGTGCACTCACAGGGGTTTGTGGGCTCAGGGATGGCTGGGCGATCTCAAGCCCCTCCTTGGCCCCTGTCACTCGTCTGGCATCATTCCTTACTGGTTCCCTCTTGCGGTTGCTCAGCTTCACCTGCTGCAGGTCACCTCCTGGCTGACTACAGTCCCAGCTCTTCTCCCATTTCCTCTCTTCATCAACTGCTCACCCTCTCTCTCGGAGACTCCATGGCTTCCCATGTGCCAGGATCAGTGAGTTGTTCTGGGCAGCCAGGAGTCAGGCTGGAGTTGGAGCCTGTCTCAACCTCAGTGCTCTTTGCTGTTCCTGGCCAGGCCAGTTCACTAGTGTTCTCAAGTCCCCCTCCTCCGGATGTTCTTCCGCACTCTCCCAGCAGGCAGCGTTAGTCTTGGCTGGGGTCACAGTGTTGTCTTTAGTCTCTGTGTTTTCGTCCGTGTTGTCTCTCAGGCAGTCTCCCAGCTCACGAGCCTGTTCCATGGATGTTCCTGAGGACCTGCCATGTGCTGCTGTTTGTGCTGTGGATGCAGCAAAGAATGACAGGAAAGGCTGAGCCCTCACTCAGCATCTGGGAGATGGAAGTCTTGAGAGATGGATGCCAGTGCCAGGCAGTGATGAGGCCGTAAAGGAAATGCACCTGGGGAGGGCAAGATGGGGTGCTCATGCCCCGGGACTGGCAGGGAGGCCTCTCTGAGAAAGTGACTCAAACTGGGGCACAGGGAGCAAGGTGGGCAGATGTCTGGGGATGAGGGTTCTTGGCAGAGGGAGCAGCAGGTGCAAAGGGCCCCAGGAAGGAGTATGGGGGATGCATTAGAGGGATGTGAGGAGCCATGTGGAGCAGAGTGGGCGTGGGGCAAGAGTCAGGAGGTGAGACGAGCCAGGGCATGGTGGAGAAGGGCACAGGGTCGTGTCCATCCTCAGAAGTGACTGCAGAGTGAATGGAGGAGTGACCAGGGCTGGCTTGCAGTGGGGAGGAGGGTGGGTCTGTTTGGTTTTGCATAATAGCTTTATCAAGATAAAATTGACATACCATAAGTTCACCTATTAAAATGTACCACTCAGCGGTTTTGAGTATATTCTCAGATTGTGTGCAGCTATCTTTACTATCTAACTCCAGAACATTTCATCACCATCTTAGTCAGCTTGGGGTACCGTGACAAAATACCACCGCCTGGGTGTCTTGTACAACAGACATTTATTTCTCACGGTTCTGTAGGCTGGAATTCTAAGAGCACAGTGCCAGCTGATTCGGGCCCTGGTAAGGGCCCCTTCCTCAATTGCAGAAGGCCGCCTTCTCTCTGTGCCCTTATATGGCAGAGAGAGGAAGCAAGCCCTGTGGTATTTCTTCTTATAAGATCACTAATCTCATTCTTAAAGGCCCCACCCTCGTGACCTAATCACCTCCCAAAGGCCTCATCTCCAAATACCCTCACAATGGGGATTAGGGTTTCAACATAGGAATTTTGCTATCGACATTCAGTCCATAGCAGTCACTCTCCGTCTTTCCCATCCCCTGCCAACCAGTAACCTACTTTCTCTCTCTATGGATTTGCCTGTTCTAGATATTCCATACGAATGGAATCTTACAATTTGTGACCTTTGTATCTGGCTTCTTTCACTCAGCAGAATGTTTTCCGGCTTATCCATGTTGTAGCGTATGTCAGTACTTTGTTCTTTTTTGTGGCTGCATAATATCCCGTCGTATGGATAGACCATATTTTGTTTATGCATTTGTTGAGGGGCATTTGGGTTGTTTCTACTTTTGGCTATTAATTAATAGTGCCACTATGAACATTAGTGTATAAATTTTTGTGTGAAGTGACTTATATTTTAGAATAAACCTCTGGGTGCTATGTAGAGAGTCAGTTTTTTTTTTTTTTTGAGACAGAGTCTCTGCTTGGTCGCCGAGGCGGGAGTGCAGTGGTGTGATTTTGGCTCACTGCAACCTTCGCCTCCCAGGTTCAAGCGATTCTCATGCCTTAGGCTCCTGAGTGGCTGGGACTACAGGTGTATAACACCACACCCGAATAATTTTTGTATTTTTAGTAGAGACAGGGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCTCCAGCCTCGGCTTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGGGCCTAGCCAGAGAGTCATATTTGGGGGCCAGAGGTGACAGAGCAGGAAGCCTGGCACCTGGCCAGCCTCAGCTCCTCCATTATCTCTCCCGTTGTCAAGCTCTCATTCATTCATTCCCTCGATACGTTCCTTCAGCATTCACTGAGAGATATTTTTGAGCTTCTACTACTTGTCATTTCTAGGCACTGGCTGTGAACATTCTAGTGCGGTGAGGTGTACCCAGAATGAATGAACACATGACCTGTATTTTGGTCAGGACAAGAGCAGATGAGGGGGCTTGAAGAGGGCTTGGGGAAAGCGGGAAGCCTGGCTTATAACAGAGTCCCTGTCCTAATCCCCAGAACTGGTTATCTTGGATACTGGGTGAGCAAGAGGGTCAGAATCAGACAAGGAGATGTGACAGCAGAAGCAGAGGTGAGTGAGAGAGATCTGAAGATGCTGTGCTCAGCTCTAGAGGTGAAGGAAAGGGCCAGGAATGCAGGCAGCCTCTAGGAACGGGAAGATGCAAGGATTTTCCCCAGAACCTCCCGAAGAGAAACCAGCCCTGCCAACACCTTGATTTTAGGACTTCTGTGTTCCAGAACTATAAGATAATAAGTGTGTTTTAAGTTACAGCAGCAAACAGGGAACTCATATACCTTGACTTCATTGCCAGTGCATGGCCCACAGCAGGTGCTCAATAAATGTTTGTTGAATGAGTGGAGCCGTGTCTGAGGGCACTTGATGTTAAAATAAGAGGAGAATCAGGGGACTTGCCAGGGCAGCTGGTTAGGACCCCATTTCAATATCAGGCCTATGGTGTTGGAGGCCTGTCCCCCTTCCGTTTTTTTCTCCCAACAGCTCAGAGATCTTTGGGTTTTCTTTCAG
Seq C2 exon
CCTGGGAGCCTCGATCTGAAAGCCAAGCATCACGCAAGGAAGAGGGCCTGCCTGAAGAGGAGCCATCCCATGTCACGGGAAGGGAAGGATTCCCGACAGATGCTCCTTATCCCACCACGTTAGGGAAAGACAGGGAGTGTCAGAGCCAGAGTCTGGCACTCAAGGAGCAGAATAACTTGAAGCAGTTGGAATTTGGCCTCAAGGAAGCACCAGTTCAAGATCAAGGCTACAAAACTCTCAGACTCAGGGAAAACTGCGTCCTGAGTTCAAGCCCAAATCCATTCCCAGAGATCTCTAGAGGGGAGTATTTGTATACTTACGACTCACAGATTACAGACTCAGAACATAACTCCAGCTTAGTCAGTCAGCAGACAGGCTCCCCAGGAAAACAGCCCGGTGAAAACAGTGACTGTCACAGAGATTCCAGTCAGGCCATTCCAATTACGGAACTCACAAAAAGCCAGGTGCAGGACAAACCCTACAAATGTACTGACTGTGGGAAGTCGTTTAACCATAACGCACACCTCACCGTGCACAAGAGGATTCATACGGGAGAAAGACCTTATATGTGCAAGGAGTGTGGGAAAGCCTTCAGCCAGAACTCCTCCCTCGTCCAGCATGAGCGCATCCACACTGGAGACAAGCCCTACAAGTGTGCCGAATGTGGGAAGTCTTTCTGCCATAGTACACACCTTACCGTCCATCGGAGGATTCACACTGGGGAGAAGCCCTATGAGTGTCAGGACTGTGGGAGGGCCTTCAACCAGAACTCCTCCCTGGGGCGGCACAAGAGGACACACACTGGGGAGAAGCCATACACCTGCAGTGTGTGTGGGAAATCCTTCTCTCGGACCACTTGCCTTTTCCTGCACCTGAGAACTCACACCGAGGAGAGGCCCTACGAGTGTAACCACTGCGGGAAGGGCTTCAGGCACAGCTCATCCCTGGCCCAGCACCAGCGGAAGCACGCGGGGGAGAAGCCCTTTGAGTGCCGCCAGAGGCTGATCTTTGAGCAGACGCCAGCTCTCACAAAGCATGAATGGACAGAAGCCCTGGGCTGTGACCCACCTTTGAGTCAAGATGAGAGGACTCACCGAAGCGACAGACCCTTCAAATGTAATCAGTGTGGGAAGTGTTTCATTCAGAGCTCTCACCTCATCCGGCACCAGATAACTCACACCAGAGAGGAGCAGCCCCATGGGCGAAGCCGGCGGCGTGAACAATCCTCGAGCAGGAACTCACACCTGGTTCAGCATCAACACCCGAACTCCAGAAAGAGCTCTGCAGGCGGAGCAAAGGCAGGGCAGCCGGAAAGCAGAGCCCTGGCTTTGTTTGACATCCAAAAAATCATGCAAGAGAAAAACCCTGTGCACGTTATTGGGGTGGAAGAGCCTTCTGTGGGTGCTTCCATGTTATTTGACATCAGAGAATCCACATAGGAGAGAAACTTTGCTGATGACTTTTAACCACAAGTAAAAAATGTGGTAAGTCCACATAGTGTACTCATGGAAGGAGGGGCTGGGGGTAGAAATGTCATGGGTGACTTCTGACTTTCTAAGGAAATGATGCTTCCCAAGCACCCGAGGTTGGTTGGTCCCAAATCTATCAAACTCAGTGCCCTCTTTAGCGACATATTTTGTGACATTCCTTCCATTACACCACAGTGAGTTCACAGGTAATATAACCTACCCACCTGTGTAATGTCAAAAAAAATCAATATGCGGCCCCATTTTGTAAAGGATCATTAAAATGAAAGTAATTTATGGTAGAGTAAATTGTAGAGTAACGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083842-ZNF8:NM_021089:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.482
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)