MmuINT0178607 @ mm10
Intron Retention
Gene
ENSMUSG00000060397 | Zfp128
Description
zinc finger protein 128 [Source:MGI Symbol;Acc:MGI:2389445]
Coordinates
chr7:12885023-12893422:+
Coord C1 exon
chr7:12885023-12885118
Coord A exon
chr7:12885119-12889995
Coord C2 exon
chr7:12889996-12893422
Length
4877 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCTCTTTGTTTTTCTTTTAGGCT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GTCCTGATCTTCCCAAACCTGCAGTTATCTCCCAGCTGGAACAAGGTGCTGAGCTGTGGGTGGCAGACAGAGGAGGCACCGGGGCCTGCCATCCAG
Seq A exon
GTAAGAACCCCACCAAATGGGTGCCCCCTAGTGGGGGGTGATTCCAGGAGGCCACTAGAGATGTACTTAGGAAGAATATGGTTTCATGGCCCTCAAACCTATTCCTCTTTTAGGAGCTTCACGGGACTTAGCATCAGACTAAAAGCTTTGGTTATAGCCAAAGATGCAAAGAAAAATCTGTGAAGGAAAAAGGCTTTAGGAGGCAAAGTCTAGAGCAGTGATTCTCGGCCTTCCTAACACCGTGACTCTTTAATACAGTTCCTCATGTTGTGGTGACCCCCAACCGTAACATTATTTCCGTTGCTGCTCCATAACTGTGATTCTGCTACTGTGATGATTTGTAGTGTAAATATCTGATATGCAGGACATCTGATATGTAACCCCCAGGTTGAGAACCACTGGTCTAGAGGCAGCAGATATGAGTTTCTAGATCTTCAGACTCTAGAGTCAGACAAGAATGTGCTCGGTTCCTCCAGCAGTGAGCTGTGATAGTACATGAGGGACCATGATCTCCAGGGAGGATGAGAGTCTGTCCTAGGGACACTGTGTCTAGCGCATACCATGATTCTGGTGCTTGAAATAAAAGTAGACAGGTGAACTTTTCTTACCAATTAGGATGGTGGGAACCCACCCCAAATCCAAGTCCCCTAACACTCCCAAAGGCCAGCAAACTGTGAGCAAACTTCTCGTAGACTGCCAGGTTAGCCAGATGTCTTGTATTTCTGGAGGGTCCACTGGGGCCTCACCCCCCTCTGCTCACAAAAGCCATCCACTTCCTCTCCAGCAGTGAGAGTCCTGCCTTGATTGTGTTTCTGCAGCATCTTACTTTCTAGGCCACACCCTTTCTCATTAGCATTCCCAGCATCCTCTTCCTGGCCTTCCATTCAGTTCTTGCACGCTGGATTCTGTAAACCTGTTCCTCATACCCTTCTATTCGTCTAATATCTAACTAGAACAGACTCTAGTTAGATATTAAACACTTGTCCTAGGACTGAAGGGTTGGCTCATTGTTAAGAGCTCTTGTTTTTCTTGCCAAGGACCAGGGTTCAATTCCCAGCACCCACCCAGGACCCCTGACTTAGCTGGCACTGGTGCTAGCTTGGCATTTTAGAAATGTGCTAGGGATAATGGTTCTAAGCTGCTCAGGGTTACAGTTTGACTACAATAGCTCTAGCCATCCCTTCCATGTTCCGGTGAGAAGTAAGGGAGGAGGTAGGAACAGGGCCACACATCTGTCCCCTGGTCCCAGTACTCTTTGGTCAGGCTTGGATTCCTTGCTCTTATCCTGACACTGTTTCCTAGAGAAGGTGGAAAGGAGAGGTCTAATACATAATAAATGGGCTGGTACACTGGGACTCTGACAGCTGGAATGAATATGGTATGGCTCTGGTGACATATAGCCAGCAGCCTGGAGTCAACCCTCCCAAATGCTTCAAGGGGTGCAGAGAGACAAACTGACCTCTATGAAGAGGTGTGACCCTCACTGTCAGGTTCGTGAGTCTGCAGCAGATCCATTTCTCCCTCCTTTATTGCTTGTTGCCAATGCTGCTTCCAACCGCTTTGTTGTCAGGAGCAAATCCGACTCATCTGGAGGAGTGCTTCTCACTGACAGCATATGCTATGACTGAATCTAGGTTCTAAAATAACGGAGCCTTGACTGGCTAGCGCAGCAGGTGTGGCATCAGAATTATAGCAGAGACTGTTAGTCATACATGTCCTAGAAGCAAAGGCCTCCAGAGAGTCCTGTTAGAATGGAAACATGCTTTGCATTAATACTTGTGTAGATGCCCTACTGCTACCATAGCAAATTACTCTGACAAAGTGGTTGGGAAACGTACAGATTTGACTGGTTGTCGTAATAAACTCCTGTAAGTCCAAGCACTGTGCAGGAAAGCCCCTGCAAAACCCTGGCCAATGTGTTTCCTCACATTTGTGAAAGTTGGTTGGAGTGGAGAGGAGTTACTAGTTCCTCAGAAGCGACTGCTCTGGCAGTTCCAGTAGAGGCCCCACTGCCTTGTCTCTGCTGGTGTGCAGAGAGAGGCTGCCGTGTACCATGGCTCATGGGGCGGCCTTCTGCACAGCACATCACTCAGCTCTGTATCCACTGCCTCACATTCCTCGTAGACTCTGGCTCGCCAGCCTTTCCTCCATGGAACCTCTTGGTGATGTTTAGAATCCCTAGAGAACTGCACACTTTTAATAGTCTTAATTTGGGCCTGGCGAAGTAGCTCACCAGTTAAGAGTGCTTTCTCTTCTTGTAAAAAACCTGAACTTGGTTCCAGCTATCTCTAACTGTAGCTCCAGGAGATCTGATGCCCTCTTCTGACCTCAGGCCCCTGCACACATATGCTGTGCATTCACATACATACGCATAAATAAAAATTAAAATTAAAATAAATTTCCATTAAAAATGTTTTAAATTAAATTTACAGTATCCTCTTTGCCATGTAACAGTGTCCAATGACTGGGATGTGGTTATCCTTGAGAGGCTATCATTCAGTTTAGCCCGCTCTTTATTCAATGAGAGTAATTCTTTTGTTTTAAAGGAAAAGAGTGCTTATCTAGGCCGAACCCCCTCCCAGTACAGCCATGTGGTTTAGTGGGCCTGTTGCATCTTGCTTTGTTTCTCACCAGTTCCCTCTTATAGTTACTTGACCTTCCCTGGTGTACTGTAGTCTCAACCCTACCGTTGCTTCCTCTTACCACAGTTTCACTCTGGAGAAACTATGACTTTCTAAACACTATGGCTCAGTAGTCTGGTAGGGGGTCAACTGGAGCGGCGAGAGCCCCTGGCCTGGCCCAGTTACACCAGCTCAGCCCTCAGTACTGGCCTGAAATCTCCCTCTCTGGGTCCTCTTCATTCCTCCGCCCCTTCCCTTTGGCAACATTGGTCTGGACCAGGGTTGCCCTGAGACTGTATTTTAATAGCATCAGCTCAGAAGTCCATTCAGCAAGCATTCCTGAGGACTCACCCATTTAATAATGCTTTTGATGCTAGGAGTGTAGCAGAAAATAAGATTGACAGACTGAGATGAGCCTTCAGTCAGGTGTCTGAAGTGAAATTATCAGGAGGTGATGGTTGAAACAAACTACAACAACAACAAAAAGCCTGAGAAACAGGGTAGATGATGCTCCCAGGACACACAGAAGTGCCTCTTTTCTGAGGTAACACTGAAGCAGGCAGATGTCTGGGGATGCACGCTCCAGCCAGAGAAAGCCGCATGGGGTGTGGCAGGAGGGACAGTAAGGAAGACAGCAGGGAAGAATGGGAAGCAGAGCAGGAGAGCACAGGCTTCAGAGGTGATCTGCATGGTGAGCAGAGGGGTAAGCAGGATGGAAAGAAGAACGAAGACCAAAGTGTGGATACTTCGCTCCTTCTTAGAATGGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCGGAGCTGAGACAAAAGGAAGCACCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATACAACCACAAAACCCAGACACTATTGCATATGCCAGCCAGATTTTGCTGACAGGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCCCTAATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGAGGATCAACGATATGAACTAACCAGTACCCGCACACACACACCCAGCTGTGTCTCTAGCTGCATATATTGCAGAGGATGGCATAGTTGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAAGATCATATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAGCAGGAGTGAATGGGTTGGGGAGCAGGGCAGGGGGAGGGTATAGGGGACTTTGGGGCTAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAGAAGAAAAAAAAGCAGAAACTCAAAAAACATTTTTGTGTGGAATGACACATTTTTATTAAGCCCCTCTGTGTGCTGTTCAGAGGCAGCAAAGGGTGTAATGCCCAGCCAGTCTCAGCTTCTTCAGCTGTTCTCCTGTGGCCAGGCTCTTGGTTTTCCCTTGAATCCCTCCAGCATTCACTGAGACAGATGTGTTTGAATATTTAGCACCTGTCAGTTCCAGGCACTGATTGGACGCTAGTGTCATGGGTGAGTCTTAGGCAGGGTGGGGCTGAAAAGATGGCTCAGCGGATGAGAGCACCTACTGCTCTTGCAAAGGACGTGGGTTCTGTTCCCAAAACCCACAAGTTGGCTCACAAGTACTCTCTGCCCTCAGTGGACTCCTGCATGAATGTTGAGGGTGGGCAATGAAGAGAAGCATAAAGTCCTCAATAAAGTGTAATTCCTAATCCCTAAAACCAGCTGTCTATAAGATGGGGCCTGTATAATCATAAGAGTAATTATAGGAAGCAAAAGGGTCACAGTAAGAAAATGATATGTGACAACAGAAGCAGAGACTATTGAGAGAGGTCTGAAGATGCTGCTCTACTGACTTCCATAGGTTCTTCTGTGGAGCTCCCAAGAACAACCAGCCCTGCTGACATCTGGACTTTAGGACTTCATATTGTAAAATACAAAACACAGCTACTTTGGGGCACGAGGTTTATGGTAGAGTGTAACAGTGTCCTTGCAAGAAAATAGTACATTTTTATTTTGTTTCCAGTGCTTGGTCTAGTTGTAAAGCTGTGGTTGAGGGCAGGGATAGTTGGTGTCAAGGGGAGAATCAGGTGTTACCAAAGCAGGTTGTCAAGGTCCAGGGTATTGGAACCTACTTCTCTCCTTGTTTTCCATTAACTACTCAGAGCTCTTTGTTTTTCTTTTAG
Seq C2 exon
GCTGGATTCTTGAACCTGAAGACCACACATTGCTCAAGGACCAGGGCCTCCCAAAAATGGAACCATCCCCTATTACAGAAAAGGATGGGTTTGCAAAGGCTGTTCCTTGTCGTTCTATGATAGGGATAGATCAGGAAAGTGATGGCCAGAGGCAGGCACTCAAGAAGGACCAGAGTAACTTGAATGACCCCAAAGAGATACCACTTCAAAGTCAAAGCCACAAAAGTCTTGGACTTGTGGAAGCCTGTGTTCTTGGCTTAAACACTTATCTATTACCAGATATTTCTGGAAGAGAGTATGGCTGTACTTATGACTCACAAGTTAAAAATTCAGAACATAATCCAAGCTTAGTTAGACAACGGACAGACTCCCCTGCAACACAGTCCTTTGATGACAATGGCAGTCAAAAAGCCTTTGATCAAATTATGCCCATTACAGAACTCACAAAAAGTCAGGTGCAAGATAAACCCTATAAGTGTACTGATTGTGGGAAGTCATTTAACCATAACGCACATCTCACAGTGCACAAGAGAATTCATACGGGAGAAAGACCTTACATGTGCAAAGAGTGTGGGAAAGCCTTCAGCCAGAACTCCTCCCTTGTTCAACATGAGCGAATCCACACTGGAGACAAGCCTTATAAGTGTGATGAATGTGGGAAATCTTTTTGCCACAGTACACACCTTACAGTCCATAGGAGAATTCACACTGGAGAGAAACCCTATGAGTGTCAGGACTGTGGGAGGGCCTTCAATCAGAATTCATCCCTAGGTCGACACAAGAGGACACACACTGGGGAGAAGCCTTATACCTGCAGTGTTTGTGGGAAATCTTTCTCCCGGACCACTTGCCTCTTCCTGCACCTGCGGACTCACACTGAGGAAAGGCCATACGAGTGTAATCACTGTGGAAAGGGCTTCAGGCACAGTTCCTCCCTGGCCCAGCATCAGCGGAAGCACGCTGGTGAGAAACCCTATGAGTGCCGACAGAGGCTGATCTTTGAGCAGGCGCCGGCTTTAATAAAGTACGAATGGACAGAACCCCTCGGCTGTGACTCACCGTTGAGTCAAGGTGAAAGGACTCAACGGAGTGATAGGCCCTTTAAGTGTAATCAGTGTGGAAAGTGTTTCACTCAGAGTTCTCACCTCATCCGACATCAGCTCACCCACAGCAGAGAGGAAGAACCACTACGTGGACGTAGCAGAAGGCAAGAACAGCCGTGTAGACGGGGCTCAAGACTCATTCAGAATACAAACTCAAATTCAAGGGAGCTTCCTGTTGCCCAGCCAAAGGCAGGACAAGCCAGCAGAACCCTGGCCCTGTTTGACCTTCGTGAAATTATGCAGGAGCAAAACCCTGTGCATGTTATTGGGGTAGAAGAACCTTCAGTGGGCAACTCCATGCTGTTTGACACCAGAGAATCTAGATAGGAAGATAATTCTTTAGATATCTTTTGAGTTACCAGGCACAAACATTATGCCCACACAGTGTATGGGTGGCAAGAGATGGCACAATATCAGTATTGACCTCTGACTTCCTAAGGAAGTGGTGCCTCCCACACAGTTGAGGTTGGTGGTTCTCAAACGTATCAAACTCAGCTCCTGTTTTTGTTTTCTGAGACAAGGTGTCATGTGGCCCAAGCTGGCCTCAAACTCACTATATATCCAAGGATGACCTTGAATTTTCTGATTTTTCTGTTTTCATTTGCCTCCCTAAGTCTGGGATCATAGCTGTGTGCCACTAGACCCAGCAACAGCAGACACCTTGAGATATCTTCTCCATTATCCCACAGTGAGTTTACCAGGAATAAAGTCTCTGCACTGGCATAGTGTGGAAATAACATATGACCCTTGTTGTGTGTAATTTAAAAAAAAACAAGCTTCCACCTTTGCCCAGAACTGTGGCGCTCAATCCTGGTTTAGCTCCAAGATCGGCTGCCACCAGTCCCACTCCCAAGTTGTCTGTTCCTCCTGGCTTAACTGAGCCAACAGCCAGCTATTGCCTTCCCCGAGTTCTTTGTAAAGGATAGTTAATTTATGGTGTATTATGTCAATGTGCTATCTTACCATGTCCATGTGGACCTATTTTTACCAGGAGATCATGGTCTGAAACTTTAAGACTGGTTCAAGGATACTGCTGTCTAAAAAAACACCATAAGGGACTTTATCATGCCAAATTGATTTTGCAGAATAGTGATGAATTCTTATGAAAGTTTGAACAAATCAAAATGCTATTGTATTGTGGAAACTGTCTAAATTCCTAATGTCCACAAAGTACTATGTGTTTCTATGTGAATTCAAGTCAGAAACCCAGTTTATGTATCACACAGGTTAAGTCACATGTAGCTCAGTTCTGCACTTGACAGTCATTGCAGCATGCTTATCTCCTGTCCTCATTTCAGTACATCATCTGACAGAGAAGGACCCACAGAATTCTACAACATCCTCTAAAGGAGTCACAGCGCCTATGAAAACCACTATCTTGAAATATCCAAGGTTGTTAGAGGTAATTTGACCTCAGAGGACATTTGGTAATATGTGGAGTCATTTTTGTCCCTGCAACTTAAAAGATGTTACTGCTATCTGGGTGGAGGCCCTGGATACTGCTCAACATACTTAAGTGTCCAGAGCAGCTCTTCCAAGAATTTTCTAGCCCCAAATATCAATAGTATTAACATGGAGAAGCCCTGATACAAACTCAACCCAGAAGGTTGAGTAATAAAACACTAGGCTGGCATGTAAAAGGCCCTAAATTCAGTCCCCAGTACAAAAGATACAATAACTCACCTTTTCTAAACTGTAAATTGATTAAACAATGCTGTATTTGAGTTGTTCTTAACAAATAGAGTCATATATATATATATATATATATATATATATATATATATATATTAGTGTTAAGTAAATTACTGATTTGCAATATTTATATTCAGGGTGAATAATTCCTTTATCTTTCTGTAAATCTTTTATCACTTAACAATGAACATTCTAAAAGACAAATGATATATTTTCACTGGGTCTCCTACCAGTATTGTTTTCACATCCACCCCAGAAAACCATCTTGTTCATCTCTCTGAATATATTTGTAAAAGGCTAAGACTTTAAGGATATATAGCTGCAACCACACTGACCCACGGGGACAAAGCCTTTTGCATAATCACACTAAGTCCATCATTTTGGGGTTTTGTCACATGGGTTTTTGAGCAGTGCTTCTGGGCCAGAATTTGAATGAAAGCAGTGACTGGGGTTATTGATTGTACTCCTCTCAACCAGAGCAGAAGATCTTTAGGGAGAAGTTACTCTTTTACATCTCCAGGGAAAAGATTACTAATATCTAACGGACACCATCAAATATCCAGCATCCACATGTTCCTGGTTGCTTCATAAAACTTCATATTTGTTTTAATCTTTCCGTAACTTATACAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060397:ENSMUST00000144578:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.420
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types