BtaEX6000209 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017839 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:3483533-3564904:+
Coord C1 exon
chr1:3483533-3483699
Coord A exon
chr1:3552497-3552674
Coord C2 exon
chr1:3563931-3564904
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTGCCCTCTCCAGGTT
3' ss Score
11.88
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ACACACCCAAATGACCAGATTCATCACAGCACGAAACTTCACAAGGTAACGCCCACTCCCACCGCCTGGAGCCCGGGGAAGGCTGGCTGCTTCCTCATTTCTGTTACTGGAAGTTCTGAGAGATGGGAAGCAAGACGCGAGCGGCATGTGCGCCTCGCTGAGCGACG
Seq A exon
GTTTTTGGCATAGCTGCATAGACGCAGATGAGACTGTGATGGCCAGCTCCAGGGGCAGGTGCTGAGACACTTCCTAGCCACCGTCAGTGTTCATCCTGACATCATCACCAGGCTCCGTATCTAAATGCCACAGTGCTCTTGGGGCAAGTTGGGCTGGGAACCGTTGTTGCCTTGTAAG
Seq C2 exon
ACCATAAAACCATGGGAAACGCAGAAAGTCAAAGTGTCGTGCATGAGTTCTATGGAGACAAGCACGCGGTCCTGGGGCGCAAGCACACGTCGCGATCCCTGCGCCTGTCGCACAAGGCACGGCGGACCAGGCACGCCTCCTCCGGCAAGGTGATCCACAGGAACTCCGAAGTGAGTACCCGGTCCAGCAGCACCCCCAGCATCCCCCAGTCCCTGGCTGAAAATGGCCTGGAGCCCTTCTCCCAGGAAGGCACCCTCGAGGACTTCGGGAGCCCCATTTGGGTGGACCGAGTGGATGTGGGCTTGAGACCCGTGTCTTACACCGATTCCTCCGTCGCTCCCAGCGTGGACAGCAGCATCGTCCTCACAGCAGCCTCCGTGCAGAGCATGCCAGACTCGGAAGACAGCCGGCTTTACGGGGATGACGCGACGTACTTGGCGGAGGGCGGCAGGCGGCAGCGCCCCTATGCCTCCAACGGACCCGCGTTCATGGAGACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017839-'4-7,'4-3,17-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.608
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGCTTCCTCATTTCT
R:
GTTCCTGTGGATCACCTTGCC
Band lengths:
250-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]