GgaEX1058484 @ galGal4
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103870326-103917066:-
Coord C1 exon
chr1:103917014-103917066
Coord A exon
chr1:103876180-103876358
Coord C2 exon
chr1:103870326-103871305
Length
179 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTCTTTCTCCCCAGGTT
3' ss Score
13.9
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAGCTACAGAGGACAACAAATGTTTCCCAGCCTTCCTACTGTAACACCCTGAT
Seq A exon
GTTTTTGGCATATAGTCATAGACTCTGACGAGGGAGTAATGGAGGCGCTGAGTGGCAGGTGCTGACAGCTTCTGCAATCCCAGTAACTGTTCATTTTGGTATCATTTGCAATTCTATACCTCTAAATGCCACAGTTCTCTTGGGGAAGGTTGCGCTGGATACCAGTATTGCCTTGGAAG
Seq C2 exon
ACTGTGAAGCCATGGGAAACGCGGAAAGCCAAAATGTAGAGCATGCCTTCTATGGAGACAAGCACGCCAGCCTGGGCCGCAAGCACACATCACGTTCACTTCGCCTCTCCAATAAAGCTTCTCGACGGACCCGACACGCTTCTTCTGGCAAAATTATCCACAGGAACTCAGAGGTGAGCACCCGCTCCAGCAGCACCCCCAGCATCCCCCAGTCTCTGGCAGAGAACGGTCTGGAGCCCTTCACCCAGGAGGCCAACCTCGAGGACTTTGGGAGCCCAATCTGGGTTGACCGTGTGGACATGGGCTTGAGGCCCGTCTCCTACCACACCGACTCCTCCGTTACGCCCAGCATGGACAGCAGCACCGTGCTCACCGCAGCCTCTGTCCAGAGCATGCCCGACTCGGAGGAGAGCCGGCTCTATGGAGAGGAACCGCCATTCCTGGCTGAGGGCGAAGGGAGGCTGCGCCGGTACGCGGCAAACGGGACGAGGTTCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842-'2-12,'2-10,13-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.693
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCTACTGTAACACCCTG
R:
CCAGACCGTTCTCTGCCAGAG
Band lengths:
258-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]