GgaALTD1023403-4/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103870326-103876358:-
Coord C1 exon
chr1:103876301-103876358
Coord A exon
chr1:103876180-103876300
Coord C2 exon
chr1:103870326-103871305
Length
121 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
CCTGATCTTTCCCCTTGCAGACT
3' ss Score
11.82
Exon sequences
Seq C1 exon
GTTTTTGGCATATAGTCATAGACTCTGACGAGGGAGTAATGGAGGCGCTGAGTGGCAG
Seq A exon
GTGCTGACAGCTTCTGCAATCCCAGTAACTGTTCATTTTGGTATCATTTGCAATTCTATACCTCTAAATGCCACAGTTCTCTTGGGGAAGGTTGCGCTGGATACCAGTATTGCCTTGGAAG
Seq C2 exon
ACTGTGAAGCCATGGGAAACGCGGAAAGCCAAAATGTAGAGCATGCCTTCTATGGAGACAAGCACGCCAGCCTGGGCCGCAAGCACACATCACGTTCACTTCGCCTCTCCAATAAAGCTTCTCGACGGACCCGACACGCTTCTTCTGGCAAAATTATCCACAGGAACTCAGAGGTGAGCACCCGCTCCAGCAGCACCCCCAGCATCCCCCAGTCTCTGGCAGAGAACGGTCTGGAGCCCTTCACCCAGGAGGCCAACCTCGAGGACTTTGGGAGCCCAATCTGGGTTGACCGTGTGGACATGGGCTTGAGGCCCGTCTCCTACCACACCGACTCCTCCGTTACGCCCAGCATGGACAGCAGCACCGTGCTCACCGCAGCCTCTGTCCAGAGCATGCCCGACTCGGAGGAGAGCCGGCTCTATGGAGAGGAACCGCCATTCCTGGCTGAGGGCGAAGGGAGGCTGCGCCGGTACGCGGCAAACGGGACGAGGTTCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842-10-12,11-12,12-12,13-12-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.693
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAATGGAGGCGCTGAGTG
R:
CAGACCGTTCTCTGCCAGAG
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]