GgaEX1058493 @ galGal4
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103870326-103933483:-
Coord C1 exon
chr1:103933227-103933483
Coord A exon
chr1:103917014-103917066
Coord C2 exon
chr1:103870326-103871305
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTTTCCATTCCAGGAG
3' ss Score
11.15
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AGGGGAGAGCGCTGGCATCTCACGGCGAGCTAATTGGAGCTTCAGCTGCGTGCCTCTGGTTGTCCACGAGCTTCCTTCTGCCCGTCCTAAGTAAGGAGAAGCAGCAGGAGGAACAGCCAGGGCCAGATGGGACTGCATGGAGGGAGAATCGGAGACTCTGCTTGCAAGGTGTCTCTGTGCAGGTGGTGATGCTGAACTCTCTGGAGCTGCTGTGTTCACCTAGAACTTGTTAGACCTGTGGAAAAGATCTTGCCAAG
Seq A exon
GAGCTACAGAGGACAACAAATGTTTCCCAGCCTTCCTACTGTAACACCCTGAT
Seq C2 exon
ACTGTGAAGCCATGGGAAACGCGGAAAGCCAAAATGTAGAGCATGCCTTCTATGGAGACAAGCACGCCAGCCTGGGCCGCAAGCACACATCACGTTCACTTCGCCTCTCCAATAAAGCTTCTCGACGGACCCGACACGCTTCTTCTGGCAAAATTATCCACAGGAACTCAGAGGTGAGCACCCGCTCCAGCAGCACCCCCAGCATCCCCCAGTCTCTGGCAGAGAACGGTCTGGAGCCCTTCACCCAGGAGGCCAACCTCGAGGACTTTGGGAGCCCAATCTGGGTTGACCGTGTGGACATGGGCTTGAGGCCCGTCTCCTACCACACCGACTCCTCCGTTACGCCCAGCATGGACAGCAGCACCGTGCTCACCGCAGCCTCTGTCCAGAGCATGCCCGACTCGGAGGAGAGCCGGCTCTATGGAGAGGAACCGCCATTCCTGGCTGAGGGCGAAGGGAGGCTGCGCCGGTACGCGGCAAACGGGACGAGGTTCGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.693
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCTCTGGAGCTGCTGT
R:
CTGGCGTGCTTGTCTCCATAG
Band lengths:
135-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]