Special

MmuEX0047312 @ mm10

Exon Skipping

Gene
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89897605-89956107:-
Coord C1 exon
chr16:89955936-89956107
Coord A exon
chr16:89908547-89908715
Coord C2 exon
chr16:89897605-89898578
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGACTTCCTATCTCCTTCAGGTT
3' ss Score
11.1
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTAGAACCATTGTGGACTGAAACCCACCTTTCCAGATCTGAAAGGAAGACTGAGGAAGAGGAAGGGAGGGGACAGTCCCGGAGACAATTCTAGTCCCTCACTCAGGACTTGAGCAGCGCCTTCAGATGGCACCTTTGGAGATCTTGACCAAGGCTCTTCTGTTTGGCCTGGG
Seq A exon
GTTTCTGGCACATTCTCCCAGACTCAGGTGAGACCCCGATGGGCACCCCGTGGGGCAGGTCCTGACACACGTCCCGACTCCAGCCACTGACACCATTGCCAGCCTCAGTCTCTAAATGCCACACCGCTCCTGGGGCCAGTTGGGCTGGGCACCACTGTTGCCTTTGAAG
Seq C2 exon
ACCATAAAACCATGGGAAACGCAGAAAGCCAAAATGTAGACCACGAGTTTTATGGAGAAAAGCATGCCAGCCTGGGGCGGAAGCACACTTCACGCTCCCTGCGGCTGTCACACAAGACCCGGAGGACACGGCATGCTTCCTCCGGGAAGGCGATCCACAGGAACTCTGAAGTGAGCACCCGGTCCAGCAGCACGCCCAGCATCCCCCAGTCCCTGGCTGAAAATGGCCTGGAGCCCTTCTCCCAAGAAGGCGCCCTAGACGACTTCGGGGACCCCATCTGGGTGGACCGAGTAGATATGGGCTTGAGACCCGTATCTTACACCGATTCTTCCGTCACTCCCAGCGTAGATGGCAGCATCGTCCTCACTGCAGCCTCTGTGCAGAGCATGCCAGACTCAGAGGAGAGCCGGCTTTACGGGGATGACGCTACGTACTTGGCTGAGGGAGGCAGGAGGCAGTGTCCCTATACATCCAATGGGCCCACATTCATGGAGACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489_MULTIEX1-6/7=4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.723
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGCAGCGCCTTCAGATG
R:
CGGGTGCTCACTTCAGAGTTC
Band lengths:
246-415
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types