BtaEX6000620 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004538 | PRDM9
Description
Bos taurus zinc finger protein 596 (ZNF596), mRNA. [Source:RefSeq mRNA;Acc:NM_001101948]
Coordinates
chr1:45028323-45029914:+
Coord C1 exon
chr1:45028323-45028482
Coord A exon
chr1:45029325-45029426
Coord C2 exon
chr1:45029643-45029914
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTTCTGTTCTCCATCTTAGAAC
3' ss Score
9.19
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AAGACAATGTCCAGAGCACCATTAAGTAAGGAATTTAGTTTGAAGGAATTGCCGGGAGCAGCCAAATTGCTGAAGACAAGTGGCTCCAAGCAGGCTCAGAAACTGGTGCCCCCTCCCGGAAAAGCAAGGACTCCTGGACAGCACCCCAGACAAAAAGTCG
Seq A exon
AACTCAGAAGAAAGGAGACTGAAGTGAAGAGGTACAGTCTACGAGAAAGAAAGGGGCATGTGTACCAAGAGGTCAGCGAGCCCCAGGATGATGACTACCTCT
Seq C2 exon
ATTGTGAGGAGTGTCAGAGCTTCTTCATCGACAGCTGTGCTGCCCATGGGCCCCCAATCTTTGTAAAGGACTGTGCAGTGGAAAAGGGGCATGCCAACCGCTCAGCCCTCACTCTGCCCCCTGGGTTAAGTATCAGAGAGTCAAGCATCCCTGAGGCTGGGCTTGGAGTGTGGAACGAGGTGTCTGATCTGCCGCTGGGCCTGCACTTTGGCCCCTATGAGGGCCAGATCACAGACGATGAAGAGGCCGCCAACAGTGGATACTCCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004538-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.543 C2=0.022
Domain overlap (PFAM):
C1:
PF0230512=Phage_F=PD(3.2=5.6),PF095145=SSXRD=PU(0.1=0.0)
A:
PF095145=SSXRD=WD(100=94.3)
C2:
PF0085623=SET=PU(20.7=18.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCACCCCAGACAAAAA
R:
CTCATAGGGGCCAAAGTGCAG
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]