MmuEX6075345 @ mm9
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15692051-15694421:-
Coord C1 exon
chr17:15694265-15694421
Coord A exon
chr17:15692530-15692631
Coord C2 exon
chr17:15692051-15692322
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGTTCTCCACTCCAGAAC
3' ss Score
10.6
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAATCATCTAGAATGCCATTTAGTGGTGAATCTAATGTGAAGGAAGGGTCTGGAATAGAAAATTTGCTGAATACAAGTGGCTCAGAACACGTCCAGAAACCAGTGTCCTCCCTTGAAGAAGGAAATACCTCTGGACAGCACTCTGGGAAAAAACTGA
Seq A exon
AACTTAGGAAAAAGAACGTTGAAGTGAAAATGTACAGGCTGCGAGAGAGAAAGGGCCTTGCCTATGAGGAGGTCAGCGAGCCTCAGGATGATGACTATCTCT
Seq C2 exon
ATTGTGAGAAGTGCCAGAATTTCTTCATCGACAGTTGTCCCAACCATGGGCCTCCTTTATTTGTAAAAGACAGTATGGTGGACAGGGGGCATCCCAACCACTCAGTCCTCAGTCTGCCCCCTGGGCTAAGAATTAGTCCATCGGGCATCCCTGAAGCTGGACTTGGAGTATGGAATGAAGCATCTGATCTACCAGTCGGTCTGCACTTTGGCCCCTATGAGGGTCAGATCACAGAGGATGAAGAGGCAGCCAACAGTGGTTACTCCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977-'9-12,'9-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=0.217 C2=0.154
Domain overlap (PFAM):
C1:
PF095145=SSXRD=PU(0.1=0.0)
A:
PF095145=SSXRD=WD(100=94.3)
C2:
PF0085623=SET=PU(22.6=20.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGACAGCACTCTGGGAAA
R:
CTCATAGGGGCCAAAGTGCAG
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: