DreEX0058030 @ danRer10
Exon Skipping
Gene
ENSDARG00000005382 | prdm9
Description
PR domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1319]
Coordinates
chr12:9751324-9752642:-
Coord C1 exon
chr12:9752494-9752642
Coord A exon
chr12:9751994-9752104
Coord C2 exon
chr12:9751324-9751595
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTCATCTGCTTTCTGACAGATT
3' ss Score
10.39
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACAACTTCCTGTTTTGGGAAGCTTGGGTTCTTGTTCGTTACAAAGCTAGTAGGCTCGAATCACAACTTGGTTGTCCTAATGTGCATCTATCTTTTAGAAGTGAAAAGTGCGACTTACTGCATCTATTGAAGCAATGTCGCTCAGTCCCG
Seq A exon
ATTTGCCCCCAAGCGAGGAGCAGAATTTAGAGATACAGGGATCTGCTACTAATTGTTATTCTGTGGTAATAATTGAAGAACAGGATGACACCTTTAATGACCAACCTTTCT
Seq C2 exon
ATTGTGAGATGTGTCAACAACACTTCATAGATCAGTGTGAGACCCATGGTCCACCTTCGTTTACATGCGACTCTCCAGCGGCTTTGGGTACACCTCAAAGAGCTCTGCTAACACTGCCACAAGGCTTGGTTATTGGTCGATCAAGCATCTCTCATGCAGGACTTGGGGTTTTCAACCAGGGCCAAACTGTTCCTCTAGGGATGCATTTTGGGCCTTTTGACGGTGAAGAGATCAGTGAGGAAAAGGCACTGGATAGTGCCAACTCTTGGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005382-'2-3,'2-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.289 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAATGTCGCTCAGTCC
R:
TCACCGTCAAAAGGCCCAAAA
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]