RnoEX0069379 @ rn6
Exon Skipping
Gene
ENSRNOG00000021493 | Prdm9
Description
PR/SET domain 9 [Source:RGD Symbol;Acc:1305247]
Coordinates
chr1:57547345-57549119:-
Coord C1 exon
chr1:57548963-57549119
Coord A exon
chr1:57547823-57547924
Coord C2 exon
chr1:57547345-57547616
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACCTTTGTTCTCCAATCCAGAAC
3' ss Score
9.59
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAAACACCCAGAATGCCATTAAGTGATAAATCTAGTGTGAAGGAAGTATTTGGAATAGAAAATTTGCTGAACACAAGTGGCTCAGAGCATGCCCAGAAACCAGTGTGCTCCCCTGAAGAAGGGAATACCTCCGGACAGCACTTTGGAAAAAAACTGA
Seq A exon
AACTCAGGAGAAAGAATGTTGAAGTGAATAGGTACAGGCTGCGAGAGAGAAAGGACCTTGCATATGAAGAGGTCAGCGAGCCCCAGGATGATGACTACCTCT
Seq C2 exon
ATTGTGAGAAGTGCCAGAATTTCTTCATCGACAGTTGTCCCAACCATGGGCCTCCTGTATTTGTAAAAGACAGTGTGGTGGACAGGGGGCATCCCAACCACTCAGTCCTCAGTCTGCCCCCTGGGCTGAGAATTGGTCCATCAGGCATCCCTGAAGCTGGACTTGGAGTATGGAATGAAGCATCTGATCTACCAGTGGGTCTGCACTTTGGTCCCTATAAGGGCCAGATTACAGAGGATGAAGAGGCAGCCAACAGTGGATACTCCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021493-'9-8,'9-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=0.143 C2=0.154
Domain overlap (PFAM):
C1:
PF095145=SSXRD=PU(0.1=0.0)
A:
PF095145=SSXRD=WD(100=94.3)
C2:
PF0085623=SET=PU(21.7=19.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAACACAAGTGGCTCAG
R:
CAGCTTCAGGGATGCCTGATG
Band lengths:
252-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]