HsaEX7003091 @ hg38
Exon Skipping
Gene
ENSG00000164256 | PRDM9
Description
PR/SET domain 9 [Source:HGNC Symbol;Acc:HGNC:13994]
Coordinates
chr5:23521023-23522885:+
Coord C1 exon
chr5:23521023-23521179
Coord A exon
chr5:23522304-23522405
Coord C2 exon
chr5:23522614-23522885
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTACTCTTCTCCAACCTAGAAC
3' ss Score
7
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGAATGCCCAAGGCGTCATTCAGTAATGAATCTAGTTTGAAAGAATTGTCAAGAACAGCAAATTTACTGAATGCAAGTGGCTCAGAGCAGGCTCAGAAACCAGTGTCCCCTTCTGGAGAAGCAAGTACCTCTGGACAGCACTCAAGACTAAAACTGG
Seq A exon
AACTCAGGAAGAAGGAGACTGAAAGAAAGATGTATAGCCTGCGAGAAAGAAAGGGTCATGCATACAAAGAGGTCAGCGAGCCGCAGGATGATGATTACCTCT
Seq C2 exon
ATTGTGAGATGTGTCAGAACTTCTTCATTGACAGCTGTGCTGCCCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGCACCCCAACCGTTCAGCCCTCAGTCTGCCCCCAGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGGGCTTGGAGTATGGAATGAGGCATCTGATCTGCCGCTGGGTCTGCACTTTGGCCCTTATGAGGGCCGAATTACAGAAGACGAAGAGGCAGCCAACAATGGATACTCCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164256-'9-15,'9-14,11-15=AN
Average complexity
A_S
Mappability confidence:
33%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=0.600 C2=0.220
Domain overlap (PFAM):
C1:
PF095145=SSXRD=PU(0.1=0.0)
A:
PF095145=SSXRD=WD(100=94.3)
C2:
PF0085623=SET=PU(16.7=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTACCTCTGGACAGCAC
R:
ATAAGGGCCAAAGTGCAGACC
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains