BtaEX6003664 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141765954-141776431:-
Coord C1 exon
chr1:141776191-141776431
Coord A exon
chr1:141774382-141774528
Coord C2 exon
chr1:141765954-141766109
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTCTAATTATCTCATTTCAGTGC
3' ss Score
6.8
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTCCCAAGAAACATTTGCAAAACGGGATTATCCGTGGCTACCAGATCGGTTACCGGGAGTACAGCACCGGGGGCAACTTCCAGTTCAACATCATCAGTATCGACACCACGGGGGACAGTGAGATTTACACCCTGGACAACCTCAACAAGTTCACCCAGTATGGCCTGGTGGTGCAGGCCTGCAACCGGGCCGGGACGGGGCCTTCTTCTCAGGAAATCATCACCACCACCCTCGAGGACG
Seq A exon
TGCCCAGTTACCCCCCCGAAAATGTTCAAGCCATAGCAACATCACCAGAAAGCATATCAATATCCTGGTCCACGCTTTCCAAGGAAGCCTTGAATGGAATTCTCCAGGGGTTCAGAGTCATTTACTGGGCCAACCTCATGGACGGAG
Seq C2 exon
AGCTGGGCGAGATTAAAAATGTCACCACCACGCAGCCTTCCCTAGAGCTGGATGGGCTGGAGAAATACACCAACTACAGCATCCAGGTGCTGGCCTTTACCCGGGCTGGAGACGGCGTCCGGAGCGAGCAGATCTTCACCCGGACCAAAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.140 C2=0.170
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(75.8=85.2)
A:
PF0004116=fn3=PU(52.3=92.0)
C2:
PF0004116=fn3=PD(46.6=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTTCACCCAGTATGGCC
R:
ATCCTCTTTGGTCCGGGTGAA
Band lengths:
251-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]