MmuEX6063652 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96678384-96685455:-
Coord C1 exon
chr16:96685215-96685455
Coord A exon
chr16:96683720-96683866
Coord C2 exon
chr16:96678384-96678539
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGTAATTGTTTCATTTCAGTAC
3' ss Score
7.28
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTCCCAAGAAACACTTACAAAACGGGATCATTCGCGGCTACCAAATAGGCTACCGGGAGTACAGCACGGGGGGTAACTTCCAGTTCAACATCATCAGTATCGACACCACCGGGGACAGCGAAGTGTACACCCTGGACAACCTGAATAAGTTCACGCAGTATGGCCTGGTAGTACAGGCTTGCAACCGGGCCGGCACAGGACCTTCTTCTCAGGAGATCATTACCACCACTCTGGAGGATG
Seq A exon
TACCCAGCTACCCTCCTGAAAATGTCCAAGCCATAGCAACCTCACCAGAAAGCATATCAATCTCCTGGTCCACACTGTCCAAGGAGGCCTTGAATGGGATTCTCCAGGGGTTCAGGGTCATCTACTGGGCCAACCTCATAGACGGAG
Seq C2 exon
AGCTGGGCGAGATTAAGAACGTCACCACCACGCAGCCTTCCTTGGAGTTGGATGGACTAGAGAAATACACCAACTACAGTATCCAGGTCCTGGCCTTCACCCGTGCAGGGGATGGCGTCCGGAGCGAGCAGATCTTTACCCGTACCAAGGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'29-28,'29-26,30-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.127 C2=0.170
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(75.8=85.2)
A:
PF0004116=fn3=PU(52.3=92.0)
C2:
PF0004116=fn3=PD(46.6=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCATTCGCGGCTACCAAA
R:
GCGTGGTGGTGACGTTCTTAA
Band lengths:
249-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types