RnoEX0029929 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37093031-37100298:-
Coord C1 exon
chr11:37100058-37100298
Coord A exon
chr11:37098521-37098667
Coord C2 exon
chr11:37093031-37093186
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTAATTGTTTCCTTTCTCAGTAC
3' ss Score
7.18
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCTCCCAAGAAACATTTACAAAATGGGATCATACGTGGCTACCAGATAGGCTACCGGGAGTACAGCACCGGGGGCAACTTCCAGTTCAACATCATCAGTATCGACACCACCGGGGACAGCGAAGTGTACACCCTGGACAACCTGAATAAGTTCACCCAGTATGGCCTAGTAGTACAGGCCTGCAACCGGGCCGGCACGGGACCTTCTTCTCAGGAGATAATCACTACCACCCTGGAGGACG
Seq A exon
TACCCAGCTACCCTCCCGAAAATGTCCAAGCCATAGCAACCTCACCAGAAAGCATATCAATCTCCTGGTCCACGCTGTCCAAGGAGGCCTTGAATGGGATTCTCCAGGGGTTCAGGGTCATCTACTGGGCCAACCTCATAGACGGAG
Seq C2 exon
AGCTGGGCGAGATTAAGAACGTCACCACCACGCAGCCTTCCTTGGAGTTGGATGGACTAGAGAAATACACCAACTACAGTATCCAGGTGCTGGCCTTCACCCGTGCAGGGGACGGCGTCCGGAGTGAGCAGATCTTTACCCGTACCAAGGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'30-22,'30-21,31-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.140 C2=0.170
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(75.8=85.2)
A:
PF0004116=fn3=PU(52.3=92.0)
C2:
PF0004116=fn3=PD(46.6=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGCTACCGGGAGTACAGC
R:
CCATCCAACTCCAAGGAAGGC
Band lengths:
251-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]