BtaEX6003878 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017060 | ITGB2
Description
Bos taurus integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) (ITGB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175781]
Coordinates
chr1:145107408-145108317:-
Coord C1 exon
chr1:145108130-145108317
Coord A exon
chr1:145107804-145108048
Coord C2 exon
chr1:145107408-145107627
Length
245 bp
Sequences
Splice sites
3' ss Seq
CTGACCCCGCATTCCCGCAGGTG
3' ss Score
9.76
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATCACCTTCCAGGTGAAGGTCACAGCCACCGAGTGCATCCAGCAGCAGTCCTTCACCATCCGGGCGCTGGGCTTCACGGACACGGTGACCGTGCGGGTCCTCCCCCAGTGCGAGTGCCAATGCCGGGACGCCAGCAGGGACGGCAGCATCTGCGGCGGCAGAGGCTCGATGGAGTGCGGCGTCTGCAG
Seq A exon
GTGTGACGCCGGCTACATCGGGAAGAACTGCGAGTGCCAGACGCAGGGCCGGAGCAGCCAGGAGCTGGAGGGCAGCTGCCGCAAGGACAACAGCTCCATCATCTGCTCGGGGCTGGGGGACTGCATCTGCGGGCAGTGCGTGTGCCACACGAGCGACGTGCCCAACAAGAAGATCTACGGCCAGTTCTGCGAGTGCGACAACGTCAACTGCGAACGCTACGACGGCCAAGTCTGCGGGGGCGAAA
Seq C2 exon
AGAGGGGGCTCTGCTTCTGCGGCACCTGCAGGTGCGACGAGCAGTATGAGGGTTCGGCATGCCAGTGCCTCAAGTCCACTCAGGGCTGCCTCAACTTGGACGGCGTCGAGTGCAGCGGCCGCGGCCGATGCCGCTGCAATGTGTGCCAGTGCGACCCCGGCTACCAGCCGCCCCTGTGCAGCGAGTGCCCGGGCTGCCCCGTGCCCTGTGCGGGCTTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017060-'17-13,'17-12,18-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.1=60.3),PF126612=hEGF=PU(15.4=3.2)
A:
PF126612=hEGF=PD(76.9=12.0)
C2:
PF079748=EGF_2=WD(100=41.9),PF079657=Integrin_B_tail=PU(5.1=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGTCCTTCACCATC
R:
GGTCGCACTGGCACACATT
Band lengths:
305-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]