GgaEX0028911 @ galGal4
Exon Skipping
Gene
ENSGALG00000007511 | ITGB2
Description
integrin beta-2 precursor [Source:RefSeq peptide;Acc:NP_990582]
Coordinates
chr7:7176927-7178579:-
Coord C1 exon
chr7:7178395-7178579
Coord A exon
chr7:7177412-7177656
Coord C2 exon
chr7:7176927-7177146
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCCCTCGTGGCAGTTG
3' ss Score
9.14
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTCACCTTCAAAGTGAAGGTCACAGCAAATGAGTGCATCAAAAGCCAGTCCTTCACCATCCGGCCCCTGGGCTTCACAGACACGCTCACTGTGCACCTGGACAGCATCTGTGACTGTGACTGCAGAGAGCAGCCTGATCCAACTGCCTGCAGTGGAAATGGCAAGGTCGTCTGTGGGATCTGCAG
Seq A exon
TTGCAATTTGAGCTACACGGGGAAGAACTGTGAGTGTGACACCAAAGGCAAGACCAGCAAAGAGCTGGAGGGCAGCTGCCGGAAGGACAACAGCTCAGTCATCTGCTCAGGGCTGGGGGACTGCGTGTGTGGGCAGTGCGTCTGCCACACCAGTGACGTACCTGGCAAGGAGATCTATGGCACCTTCTGCGACTGTGACAACATGAACTGCGAGTTTCACAACGGCTCACTGTGTGGTGGCGAGG
Seq C2 exon
AGCGTGGACGATGCGACTGTGGTGAGTGCAAGTGCACACCCAAGTACGAGGGCAGTGCCTGCCAATGCAAGAAGTCGACTGATGGCTGTAGGAACAGCCGGCAAAATGAATGCAGCCTGCGTGGCTCCTGCCACTGCAACCGCTGCCAGTGCCGAGGGGGCTACCAGCCCCCCTTCTGCGAGGAGTGTCCTGGCTGCCCCTCACCCTGTGGCAGGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.1=61.3),PF079748=EGF_2=PU(65.6=33.9)
A:
PF079748=EGF_2=PD(31.2=12.0),PF079748=EGF_2=WD(100=45.8)
C2:
PF079748=EGF_2=WD(100=41.9),PF079657=Integrin_B_tail=PU(5.0=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTCACAGCAAATGAGTGC
R:
ACGCAGGCTGCATTCATTTTG
Band lengths:
292-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]