GgaEX0028911 @ galGal3
Exon Skipping
Gene
ENSGALG00000007511 | F1NM67_CHICK
Description
NA
Coordinates
chr7:7143539-7146509:-
Coord C1 exon
chr7:7146325-7146509
Coord A exon
chr7:7145341-7145585
Coord C2 exon
chr7:7143539-7143961
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCCCTCGTGGCAGTTG
3' ss Score
9.14
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTCACCTTCAAAGTGAAGGTCACAGCAAATGAGTGCATCAAAAGCCAGTCCTTCACCATCCGGCCCCTGGGCTTCACAGACACGCTCACTGTGCACCTGGACAGCATCTGTGACTGTGACTGCAGAGAGCAGCCTGATCCAACTGCCTGCAGTGGAAATGGCAAGGTCGTCTGTGGGATCTGCAG
Seq A exon
TTGCAATTTGAGCTACACGGGGAAGAACTGTGAGTGTGACACCAAAGGCAAGACCAGCAAAGAGCTGGAGGGCAGCTGCCGGAAGGACAACAGCTCAGTCATCTGCTCAGGGCTGGGGGACTGCGTGTGTGGGCAGTGCGTCTGCCACACCAGTGACGTACCTGGCAAGGAGATCTATGGCACCTTCTGCGACTGTGACAACATGAACTGCGAGTTTCACAACGGCTCACTGTGTGGTGGCGAGG
Seq C2 exon
GCTGATAATCCTCTGTTCAAGAGTGCCACCACCACCGTCATGAATCCCAGATTTGATGGGCAATGAACTGGAGTGATGCCTGGAAGCACTAGGACCCACCACTAAATAAGGAAACACCAAACAAGGAAATCTCAGGCTCCCACCTCTTCTTCTTTATTGTGTTGTTTTTAACCCTTCTTCCAAGAGACCACCAGTAGCCAGGTGCTGGCTGAGGGGCTGCACAGTACCTATCCTCTCTCCCAGAGCCATCTGGTTGCACTGTAGGAGGAGGGAACAGCAGTGCCATGGACGGGGCTGCAGAGCAGATCTTACCAACAGGCACTCACCCCAGCTCCAGTTTCCATCTGTCCTAGCTCCTGGTGCTAACTTTACTTTGTGGCAGGACCTTCAGACACCAAGTCCCATAGGGACTTAGCACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007511_MULTIEX1-6/10=5-10
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.1=61.3),PF079748=EGF_2=PU(65.6=33.9)
A:
PF079748=EGF_2=PD(31.2=12.0),PF079748=EGF_2=WD(100=45.8)
C2:
PF087256=Integrin_b_cyt=PD(42.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGACAGCATCTGTGAC
R:
CCTGGCTACTGGTGGTCTCTT
Band lengths:
294-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]