BtaEX6004233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147959522-147964409:+
Coord C1 exon
chr1:147959522-147959645
Coord A exon
chr1:147964083-147964204
Coord C2 exon
chr1:147964298-147964409
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCTGATCGTGTCTCTCCAGGGG
3' ss Score
9.35
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGCACAGTCACCAGCACCGCAACCTGCGTCCAGCTCCACAAAAAGGCCGAGCGAGTGGCCGCTGCTCTGATGGAGAAGGCAAGGCTGAGTGCCGGGGCCCATGTGGCCCTGGTCTACCCTCCAG
Seq A exon
GGGTGGACCTCATTGCTGCCTTCTACGGCTGCCTGTACTGTGGCTGCGTGCCCGTCACCGTGCGGCCCCCACACCCCCAGAACCTTGCCACCACACTTCCTACCGTCAAGATGATTGTGGAG
Seq C2 exon
GTCAGCAAGTCTGCGTGCGTGCTCACCACGCAGGCCATCATGCGGCTGCTCAGGTCCAAAGAAGCAGCAGCCACCGTGGACGCCAGGACCTGGCCGACCATTCTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'30-39,'30-38,31-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACAGTCACCAGCACC
R:
CTGTGTCCAGAATGGTCGGC
Band lengths:
236-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]