DreEX6034608 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:597642-599774:-
Coord C1 exon
chr9:599651-599774
Coord A exon
chr9:599066-599187
Coord C2 exon
chr9:597642-597753
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTGACCTGTGCAGGCA
3' ss Score
8.67
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
GGCACTGTGGTCAACACTGCGTCCTGTGTGCAGCTGCACAAGCGTGCGGAGCGTGTGGCGTTAGCGCTGATGGAGAGAGGACGACTGAACGCTGGAGATCACGTAGCACTGCTGTATCCTCCTG
Seq A exon
GCATTGATCTGATCGCCACGTTTTATGGCTGTCTGTACGCCGGCTGTGTTCCCGTCACCGTCAGACCCCCACACCCGCAGAACCTGACCACAACCCTGCCTACCGTCAAGATGATTGTTGAG
Seq C2 exon
GTCAGTAAGTCTGTGTGTATTCTGACCACTCAAGCAATAATGAAGCTACTGAAATCCAAAGAGGCGGCGGCGGCTGTGGACATTAAAGCATGGCCGTTGATACTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAACACTGCGTCCTGTG
R:
CTGTGTCCAGTATCAACGGCC
Band lengths:
228-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]