GgaEX0008884 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6915549-6917050:-
Coord C1 exon
chr7:6916927-6917050
Coord A exon
chr7:6915998-6916119
Coord C2 exon
chr7:6915549-6915660
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTCACTAATAATTTCTACAGGAG
3' ss Score
5.86
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GGCACTGTAGCTAGCGCTGCATCGTGCATGCAGTTGCACAAGAGAGCAGAGAGAGTGGCAGTTGCACTAATGGAGAAGGGACGACTGAATGTTGGTGACCATGTAGCCCTGGTTTATCCTCCAG
Seq A exon
GAGTAGACTTGATAGCAACTTTCTATGGCTGCTTGTATGCTGGCTGTATACCTATCACTGTTCGCCCACCTCATCCACAGAATCTTGCTACCACTCTGCCCACTGTAAAAATGATCGTAGAG
Seq C2 exon
GTCAGTAAGTCTGCATGTATACTCACCACACAAGTGATAACGAAACTGTTGAAATCCAAGGAAGCTGCAGCAGCTGTAGATATTAAGACATGGCCCACTATTTTGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'40-43,'40-42,41-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
PF0050123=AMP-binding=FE(8.4=100)
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAGCGCTGCATCGTG
R:
TGTATCCAAAATAGTGGGCCATGT
Band lengths:
227-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]