BtaEX6006709 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90839930-90840718:+
Coord C1 exon
chrX:90839930-90840034
Coord A exon
chrX:90840122-90840202
Coord C2 exon
chrX:90840563-90840718
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTTGCATTCCTCAGCGC
3' ss Score
8.14
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTTGCTCTGGGAAGTTTATGCCCATCATGCAGTGGCTGTACTTTGATGCCCTTGAGTGTCTCCCTGAGGACAAAGAGGCCCTCACAGAGGACAAGTGCCTCCCG
Seq A exon
CGCCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTGCAGGAGAGGTTGGGCAAGCAGAAGTACTTCCTG
Seq C2 exon
GTGGGCGCAGGGGCCATTGGCTGTGAACTGCTCAAGAACTTTGCCATGATTGGGCTGGGCTGTGCAGAAGATGGAGAAATTGTTGTCACAGACATGGACACCATTGAGAAGTCAAATTTGAACAGACAGTTTCTGTTCCGGCCCTGGGATGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'25-19,'25-18,27-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGCCCATCATGCAGTGGC
R:
TTCTCCATCTTCTGCACAGCC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]