DreEX0082628 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20727797-20729348:+
Coord C1 exon
chr23:20727797-20727904
Coord A exon
chr23:20728017-20728097
Coord C2 exon
chr23:20729196-20729348
Length
81 bp
Sequences
Splice sites
3' ss Seq
CAGTTATCTGTTTTGTACAGAGG
3' ss Score
4.1
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCCTGCACAGGGAAGTTTATGCCCATCATGCAGTGGCTGTATTTTGATGCTTTGGAGTGCTTACCTGAGCCTGAGGAAGTCATTCTTACAGAGGAAGAGTGTGCTCCT
Seq A exon
AGGAACTGCCGGTATGACGGCCAGATTGCCGTCTTTGGGTCCAAGCTGCAGGAGCTGTTAGCCAAGCAGAGATATTTTCTG
Seq C2 exon
GTTGGTGCTGGAGCCATTGGCTGTGAGCTGCTGAAGAACTTTGCTATGATGGGCTTGGCCAGTGGTGAAGGAGAGGTCATAGTCACTGACATGGACACCATTGAGAAGTCCAATCTCAATCGACAGTTCCTCTTCAGACCCTGGGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'23-20,'23-19,24-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.2=22.2)
C2:
PF0089916=ThiF=FE(34.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGGAAGTTTATGCCCA
R:
TGACCTCTCCTTCACCACTGG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]