GgaEX6009819 @ galGal4
Exon Skipping
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2431884-2432367:-
Coord C1 exon
chr12:2432260-2432367
Coord A exon
chr12:2432107-2432187
Coord C2 exon
chr12:2431884-2432039
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGCCACCCCTCTCCCGGCAGAGG
3' ss Score
7.83
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCCATCACGGGGAAGTTCCTGCCCCTGGAGCAGTGGTTTTACTTTGACGCCCTGGAGTGCCTGGCCGTGGAGGGGGCTGCGGGGCTGATGCCGGAGGACTGCGCCCCG
Seq A exon
AGGGGGTCCCGCTACGACGGGCAGATTGCCGTGTTCGGGGCCGACTTCCAGGAGGAGCTGGGCCGCCAGAAGTACTTCGTG
Seq C2 exon
GTGGGAGCCGGCGCCATCGGCTGCGAGCTGCTGAAGAACTTTGCCATGATGGGGCTGGCAGCGGGGCCGGGCGGGGACATCACCGTCACCGACATGGACACGATCGCACGCTCCAACCTGCACCGGCAGCTTCTGTTCCGTGAGGCTGACGTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521-'15-21,'15-19,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF052378=MoeZ_MoeB=PD(44.1=72.2)
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTTTGACGCCCTGGAGTG
R:
GATCGTGTCCATGTCGGTGAC
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]