MmuEX6068769 @ mm10
Exon Skipping
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107978209-107978781:+
Coord C1 exon
chr9:107978209-107978316
Coord A exon
chr9:107978465-107978545
Coord C2 exon
chr9:107978626-107978781
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCATTATCTGTGTTCCCTAGAGA
3' ss Score
8.66
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GCCATCTCCAGGAAGTTCATGCCCCTGGATCAGTGGCTGTACTTTGACGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTTCCCAGCCCTGAGGATTGTCAGCCA
Seq A exon
AGAAACTGCCGATACGATGGGCAAATTGCTGTGTTTGGAACTGATCTTCAAGAGAAACTGAGTGACCAACACTACCTCTTG
Seq C2 exon
GTGGGTGCTGGTGCCATTGGCTGTGAGATGCTCAAAGTCTTTGCCCTAGTGGGCCTCGGAGTTAGGGCGAATGGAGGTGTGACTGTTGCTGACATGGATTACATAGAACGCTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCCCAAGGATGTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-'16-28,'16-26,17-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATGCCCCTGGATCAGTG
R:
CACACCTCCATTCGCCCTAAC
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types