BtaEX6095303 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50995128-50995710:+
Coord C1 exon
chr22:50995128-50995235
Coord A exon
chr22:50995393-50995473
Coord C2 exon
chr22:50995555-50995710
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCTGTGTTCCCTAGAGA
3' ss Score
9.73
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCGATCTCTGGCAAGTTTATGCCCCTGGACCAGTGGCTGTACTTCGATGCTCTGGATTGCCTTCCAGAAGATGGGGACCCCTTTCCCAACCCTGAGGACTGTGCACCG
Seq A exon
AGACGCTGCCGCTATGATGGGCAAACCGCAGTGTTCGGGACCAATTTTCAGGAGAAGCTGAGCCACCAGCACTACCTCCTG
Seq C2 exon
GTGGGTGCTGGCGCTGTTGGCTGCGAGCTGCTCAAAAGCTTTGCCCTGATGGGCCTGGGGGCCGGGGACGGTGGAGGCGTGACTGTTGCCGACATGGACCATGTGGAGCTCTCCAACCTCAGCCGGCAATTCCTCTTCAGGTCCCAGGACATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-'13-17,'13-15,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCAACCCTGAGGACTGT
R:
GACCTGAAGAGGAATTGCCGG
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]