RnoEX6037552 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116756840-116757397:+
Coord C1 exon
chr8:116756840-116756947
Coord A exon
chr8:116757082-116757162
Coord C2 exon
chr8:116757242-116757397
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCATTATCTGTGTCCCCTAGAGA
3' ss Score
8.54
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GCAGTCTCCGGGAAGTTCATGCCCCTGGACCAGTGGCTGTACTTTGATGCCCTTGAATGTCTTCCAGAAGATGAGACGCTCCTGCCCAGTCCTGAGGACTGTCATCCA
Seq A exon
AGAAACTGCCGATACGACGGGCAAATTGCTGTGTTCGGGACTGGTTTTCAGGAGAAACTGAGCTACAAACACTACCTCTTG
Seq C2 exon
GTAGGTGCTGGTGCCATTGGCTGTGAGATGCTCAAAGGTTTTGCCCTAGTGGGCCTGGGAGTTAGGGATAATGGCGGTGTGACAATTGCTGACATGGACCACGTAGAACGCTCCAACCTCAGCCGGCAGTTCCTCTTCAGGCCCAAGGACACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'11-18,'11-16,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGATGAGACGCTCCTGC
R:
GCTGAGGTTGGAGCGTTCTAC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]