BtaEX6006712 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90839131-90839803:+
Coord C1 exon
chrX:90839131-90839228
Coord A exon
chrX:90839349-90839495
Coord C2 exon
chrX:90839627-90839803
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGATGCCCTGCTTCCCACAGAAA
3' ss Score
9.36
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
GTCCTTACACCTTTAGCATCTGTGACACCTCCAACTTCTCTGACTACATCCGCGGAGGCATCGTCAGCCAGGTCAAAGTACCCAAGAAGATCAGCTTT
Seq A exon
AAATCCTTGCCAGCCTCCCTAGCAGAGCCTGACTTTGTGATGACAGACTTCGCCAAGTATTCCCGCCCTGCCCAGCTACACATTGGCTTCCAGGCCCTGCACCATTTCTGTGCTCAGCATGGCCGGTCCCCTCGGCCCCACAATGAG
Seq C2 exon
GAGGATGCAGCAGAGCTGGTGACCATAGCCCAGGCTGTGAACGCTCGATCCCTGCCCGCAGTGCAGCAGGGCAGCCTGGATGAGGACCTCATCCGGAAGCTAGCATATGTGGCTGCTGGGGACCTGGCTCCCATAAATGCCTTCATTGGGGGCCTTGCTGCCCAGGAGGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'21-16,'21-15,23-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTAGCATCTGTGACACCTCC
R:
GGCCCCCAATGAAGGCATTTA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]