RnoEX6024987 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1733353-1734135:-
Coord C1 exon
chrX:1734038-1734135
Coord A exon
chrX:1733657-1733803
Coord C2 exon
chrX:1733353-1733529
Length
147 bp
Sequences
Splice sites
3' ss Seq
TATATGCTGCCTTCCCACAGAAA
3' ss Score
10.1
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCCTTATACTTTTAGTATCTGTGACACCTCCAACTTCTCTGACTACATCCGTGGAGGCATCGTCAGCCAGGTCAAAGTACCTAAAAAGATTAGCTTT
Seq A exon
AAATCCTTGCCAGCATCACTGGCAGAGCCTGACTTTGTGATGACTGACTTTGCCAAGTATTCTCGCCCTGCCCAACTGCACATTGGCTTTCAAGCTCTGCACCAATTCTGTGCTCAGCACAACCGACCACCTCGACCACGAAATGAG
Seq C2 exon
GAAGATGCAACAGAACTGGTGACCCTAGCTCAGGCTGTGAATGCTCGGTCCCCACCTGCAGTACAACAGGACAACGTGGATGAAGACCTTATTCGGAAGCTAGCTTATGTTGCTGCTGGGGACCTGGCACCTATAAATGCTTTCATTGGGGGCCTCGCTGCCCAGGAAGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'23-14,'23-13,24-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACCTCCAACTTCTCTGACT
R:
CTTCATGACTTCCTGGGCAGC
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]