DreEX6080090 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20726388-20727691:+
Coord C1 exon
chr23:20726388-20726485
Coord A exon
chr23:20726567-20726713
Coord C2 exon
chr23:20727515-20727691
Length
147 bp
Sequences
Splice sites
3' ss Seq
CGCACTTCTTTCTTCACCAGAAA
3' ss Score
8.69
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTCCTTACACTTTCAGCATCTGTGACACCAGCTCATTCTCTGACTATGTGAGAGGTGGTATTGTCACACAAGTGAAGATGCCCAAGAAGATTGCCTTT
Seq A exon
AAATCCCTGTCCTCCTCCATGGCCGAACCAGAGTTCTTGCTGACTGATTTTGCCAAATTTGATCGTCCAGGCCAACTCCACGTGGGCTTTCAGGCACTGCATGCATTTGAGAAGAAGCACAGTCGTCTGCCAAAGCCCTGGAATCAG
Seq C2 exon
GCAGATGCGGATGAGCTTATGACTCTGGCTGAAGAGGTGAATGCTGCACAGACAGGATCTGCCAAGCAAGAGGAGCTGGACCAGGCAGTCATAAAAAAGCTGGCCTGCGTGGCTGCTGGAGACCTGGCACCCGTCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'20-16,'20-15,21-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGTGACACCAGCTCAT
R:
CATAACCTCCTGGGCAGCAAG
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]