BtaEX6006717 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90836458-90837008:+
Coord C1 exon
chrX:90836458-90836516
Coord A exon
chrX:90836617-90836785
Coord C2 exon
chrX:90836874-90837008
Length
169 bp
Sequences
Splice sites
3' ss Seq
GACACCCTCTAACCCGGCAGGTA
3' ss Score
7.62
5' ss Seq
CAGGTTCCT
5' ss Score
0.18
Exon sequences
Seq C1 exon
GGAATGGCGAAAAATGTCAGTGACGCAGACATAGATGAAGGCCTTTACTCCCGGCAGCT
Seq A exon
GTATGTGTTGGGCCATGAGGCAATGAAGCGGCTCCAGACCTCCAGCGTACTGGTATCAGGCCTTCGGGGCCTGGGCGTGGAGATTGCCAAGAACATCATCCTCGGTGGGGTCAAGGCTGTCACACTGCATGACCAGGGCACTGCCCAGTGGGCCGACCTCTCCTCCCAG
Seq C2 exon
TTCTACCTGCGGGAAGAAGACATAGGAAAAAACCGAGCTGAGGTCTCCCAGCCCCGTCTCGCTGAGCTCAACAGCTATGTGCCTGTCAGTGCCTACACCGGGCCCCTTGTGGAGGACTTTCTCAGTGACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'13-7,'13-6,15-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(33.3=77.2)
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGCGAAAAATGTCAGTGA
R:
CTGGAAGTCACTGAGAAAGTCCT
Band lengths:
194-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]