DreEX0082623 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20722336-20724240:+
Coord C1 exon
chr23:20722336-20722394
Coord A exon
chr23:20722496-20722664
Coord C2 exon
chr23:20724106-20724240
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATTTAGTATACGTTTCTCAGGTA
3' ss Score
3.26
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGCATGGCTAAGAATGGAAATGATGCTGAGATCGACGAGGGCCTGTACTCCAGACAGCT
Seq A exon
GTACGTGCTGGGTCATGATGCTATGAAGCGTATGCAGAGCTCTAATGTTCTTATCTCGGGACTGCGAGGTTTAGGGGTAGAGATCGCTAAGAATGTCATTCTGGGTGGAGTCAAAAGCGTCACCCTGCACGATCAGGGAGTGGCCGAGTGGAAGGACCTTTCATCACAG
Seq C2 exon
TTTTACCTGCGTGAGGAGGATCTTGGGAAGAACCGTGCTGATGTCAGTCAGCCTCGACTGGCAGAACTGAACAGTTATGTGCCTGTAACCTCCTACACTGGCACCCTCACCAATGAATACCTGACCAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'12-8,'12-5,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(33.3=77.2)
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGCTAAGAATGGAAATGA
R:
CTGAAATTTGGTCAGGTATTCATTGG
Band lengths:
194-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]