RnoEX0095573 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1736314-1736848:-
Coord C1 exon
chrX:1736790-1736848
Coord A exon
chrX:1736536-1736704
Coord C2 exon
chrX:1736314-1736448
Length
169 bp
Sequences
Splice sites
3' ss Seq
AGTACCCTCTAACTTGACAGGTA
3' ss Score
7.29
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGAATGGCGAAGAACGGCAGTGAAGCAGACATAGACGAGAGCCTTTACTCCCGGCAGCT
Seq A exon
GTACGTTTTGGGCCATGAGGCAATGAAAATGCTCCAGACATCCAGTGTCCTCGTCTCAGGCTTGCGGGGCTTAGGTGTCGAGATTGCTAAGAACATCATCCTTGGTGGGGTCAAGGCTGTCACCCTACATGACCAAGGCACTACACAGTGGGCTGATCTCTCCTCCCAG
Seq C2 exon
TTTTACCTTCGGGAGGAGGACATTGGTAAAAATCGAGCTGAGGTATCCCAGCCCCGACTTGCTGAACTCAACAGCTATGTACCTGTTACTGCCTACACTGGGCCTCTTGTTGAAGACTTCCTTAGTGGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'15-8,'15-6,17-8
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(33.3=77.2)
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAACGGCAGTGAAGCAGA
R:
CTGGAAACCACTAAGGAAGTCTTCA
Band lengths:
186-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]