BtaEX6008372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4869761-4875055:-
Coord C1 exon
chr2:4874845-4875055
Coord A exon
chr2:4874129-4874264
Coord C2 exon
chr2:4869761-4869864
Length
136 bp
Sequences
Splice sites
3' ss Seq
TAGGGCATCCGTTCTTCCAGGGG
3' ss Score
5.15
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CTTCGAGCAGCTCTGCATCAACCTGGCCAACGAGCACCTGCAGCAGCTGTTTGTGCAGCACGTGTTCACCGTGGAGCAGGAGGAGTACCGCGCGGAGAGCATCGCCTGGGACTACATTCACTACACCGACAACCGGCCTACCCTGGACCTGCTGGCCCTCAAGCCCATGAGCGTCATCTCCCTCCTGGATGAGGAGAGCCGCTTCCCACAG
Seq A exon
GGGACAGATACCACCTTGCTGCAAAAACTGAAGAGTGTCCACGCTAACAACAAAGGCTTCCTGCAGCCCAAGAACATCCACGATGCCCAATTTGGCATTGCCCACTTTGCTGGCGAGGTGCACTACCATGTAGAAG
Seq C2 exon
GCTTCCTGGAGAAGAATCGGGATGTGCTGAACAGGGACATCCTCGCCCTGGTCCACTCCTCCCAAAACAAGTTCCTGCGGGAGATATTTGGGCTGGAGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'14-15,'14-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.6=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGCAGCACGTGTTCAC
R:
CAGCCCAAATATCTCCCGCAG
Band lengths:
258-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]