GgaEX6045484 @ galGal4
Exon Skipping
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:845172-846937:+
Coord C1 exon
chr9:845172-845382
Coord A exon
chr9:846440-846575
Coord C2 exon
chr9:846846-846937
Length
136 bp
Sequences
Splice sites
3' ss Seq
CCACCTGTATTTGTTTCTAGGGC
3' ss Score
10.01
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTTGAGCAGCTCTGCATTAACATTGCAAATGAACACCTTCAGCAGTTCTTTGTGCACCATGTCTTCAAGCTGGAGCAAGAGGAATACCTTGCAGAGCACATTACCTGGAATAACATTGACTTCACTGACAACCGCCAGACCCTGGAAGTCATTGCACTCAAGCCCATGAACATCATCTCCCTCATTGATGAGGAGAGCAAGTTCCCAAAG
Seq A exon
GGCACAGATGCCACCATGCTTATCAAAATCAATTCCCTCCATGGAAAAAGTAGAGTCTATATCCCACCTAAGAGTGACCATGACACCAAGTTTGGCATTAACCACTTTGCTGGGGCTGTCTTTTATGAATCAAAAG
Seq C2 exon
ATTTCTTGGAGAAAAACAGGGACACACTGAGTGCGAATGTAATGCAAGCGGTTCATTCCTCCAAAAACAAATTCCTGAAGGAGATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.5=100)
A:
PF0006316=Myosin_head=FE(6.7=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAATGAACACCTTCAGCA
R:
GGAGGAATGAACCGCTTGCAT
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]