BtaEX6008526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027020 | COL5A2
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr2:7275340-7277275:+
Coord C1 exon
chr2:7275340-7275393
Coord A exon
chr2:7275610-7275663
Coord C2 exon
chr2:7277222-7277275
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTAAAATCTGCTTTTCAGGGA
3' ss Score
7.33
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTCTTCCGGGTCCCTTGGGCCCTCCAGGTCCTTCAGGCCCTACTGGAGAAAAG
Seq A exon
GGAGAACCCGGCCCTCGAGGTTTAGTCGGCCCGCCTGGCTCCCGTGGCAATCCC
Seq C2 exon
GGCTCACGTGGTGAAAATGGCCCAACTGGAGCTGTGGGTTTTGCGGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027020-'40-43,'40-41,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.7=100),PF0139113=Collagen=FE(20.2=100)
A:
PF0139113=Collagen=PD(3.7=16.7),PF0139113=Collagen=FE(20.2=100)
C2:
PF0139113=Collagen=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCCGGGTCCCTTGG
R:
CTGGGGTCCCGCAAAACC
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]