GgaEX6041350 @ galGal4
Exon Skipping
Gene
ENSGALG00000002509 | COL5A2
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr7:536769-538113:+
Coord C1 exon
chr7:536769-536822
Coord A exon
chr7:536940-536993
Coord C2 exon
chr7:538060-538113
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTTCAAGTTTTATTTTAAGGGT
3' ss Score
5.74
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGTCTTCCTGGTCCAATAGGCCCAATGGGTCCAGCAGGGTCCACTGGAGAAAAG
Seq A exon
GGTGAACCAGGTCCTCGAGGTCTTGTTGGTCCTCCCGGTTCTCGTGGAAACCCT
Seq C2 exon
GGTTCTCGAGGAGAAAATGGCCCAACTGGTGCTGTTGGTTTTGCTGGTCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002509-'50-53,'50-51,51-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.7=100),PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=PD(6.7=27.8),PF0139113=Collagen=FE(20.0=100)
C2:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(5.8=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCCTGGTCCAATAGGC
R:
TGGAGGACCAGCAAAACCAAC
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]